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Mouse element [ mm1901 ]


Position: chr13:15,570,613-15,575,143 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTCCAGGTTTTCCCACTAGGTAggccatccatgtctttgttttgtagatttcaggcatgc
ctccttgctctggagttttctagatttcaggcatgtctccttgctttgagttttgtagat
ttcaggcatgcctccttgctctggagtttgtgtttatagatttcaggcgtgcctccttgc
tctgggttctactccacttttctgtgtacccttaggaagaataagttgtctgagttaaaa
aatggattcactttaccggaatgtgtgtaaaaatttgtctgtattgctcccctttttgtg
gcatttaaacccaagcttacttaacccagtctgaatatttgtgtcttgttttcaggtatt
ataaaaagcatattctatttcaaatacatgctatcttgaattccttgtttttctggagtt
tataaatattaggctaacttatcattttgtaagtaggaacagtatgtaaagtgctagtta
tttggtgcttttaatactaattttataagaataagcactttatatgtgttaagcttcaca
aaaacaccaatgttgttgtgtagagccatatatgtgggtgtttcctagcacaaagccagt
gcaggttggttgaggatgcttttgcaccatgtggactgttagaagccactgtcctgtaaa
tcccagcagagggtcttcagtggtctttgtgggaagatgctgttgcctctgtggatcttg
cttccacactgagacacatactctggggcttctccgttgctcctcagcttggcatcagtc
agtctctgaccacaggttctcctcataaccatgttgagggggactggaacattactaacc
tgaacccagtggtgacttgggggcctggaggcctgggccaaaagctagccagagaaagga
cagtcttaaagctagttctgcacttggcataatcataggcctgtttgctaagctactcac
actcttgccttcctaacctgatcagcccttgaggcccacagcctgtccaaacgtgcacga
gtcctgtctcgtatggacataaatactcactagtcatgcttgcagggcatatgtctgaat
gagatctgtctcagagtagcttttcagaattcctgatctaaagaattcattccttttcat
ctggggacaataggaaactcgatgaaacaaaacaaaacaaaaaaattgttatattttttc
taaaactggatttccacctaatagactgactccaggaaaataagcaaatgcgtttagaac
acaatacacagtgcaaaagaaaggccagtgaaggcaagcatgacacctgtttggaatccc
tgcatttgggaggaggctgaggcaggagaattacgagtttgaggtctgcttgggctatgt
ggtgacaaacagaggagtgtcctgtttcctttgtttatgtgaatgctaataattacagtg
atcttttcagagttctgcggttttcatctaactaggttggaatctttttactgtaccatg
gttgtgggtaagggttgatggttgggatcacagtctccatactgctcgctcccttcttgc
ctgcttcaagctctgccttgctgttattcacatcagtgtatggactttcgtcctgtgctg
cttgggttagagcttttggtagggagccttgcaaagattggtgctctgtgtgtgttgacc
tgtggtggaaattattgtggttgctgtttgtgcactcctcagttgtctattcacctactc
ctttctctacagtttagaagtgcctgaatacctacactgaagtcattcacaaaaattgga
gtcattaagataccacaatagggggcacagtgatcgtacctaattccagaggttatgctt
gccttaagactgctctgatattgagtttgtaactagacagttaaaagatttagctcagat
atcaggatgtatgaaccaaatgaatataaagtatattttagattctacccattttgtgat
taaaagtaagtaaatagaaaagttttgttattggtgaagctgttggttgacttaattaac
cttcccagtcattatgtggtataatttgttcttgattgtgaacatcccagccaaaccacg
cacattccactgcgtgttcttacaggtctgttttcttgcttttctcaattgagtatctgc
tcctagagttttgtttaaacaaacatagagacacagccaaaatatatggttcaaaaatct
tgaagaacatggtaaataaacatttgctacatgagattgaaatttaaaataacatgagtg
aaaagttgtgctctaaatcttgtgtcgggggaaagaaaccaagtcaaattagatttgtgt
agcttttcaggatccacacgtgtaagcagagccttcagtgatctctgcacagaaccacat
tatgtgcatagtttcctgtgtgcacacttcagctttaagcagttcgtgcttttcgtgaga
tggaagtgacacaggcaatggtatttagccttctgaatgttttttaagtgcaattgtggc
ttaagagattattcttgacatctaacaggatagctttcatatataaatgtgcatttagag
atattaggcctcacattggcttgagggtgtccaagtctgttaataaggtaagctcttggt
aaatgctttaatgctctctgtttttgcatgattcattacttcctaagctacacattgtat
tttctaagtaatgagttttaaatctgcatttcttttgctctccgtgttttaattaaccta
taaaacttctctgtatgacttgaatatttaatttaaaatgttttgcctcatttttggccc
atgagtttttcgtttttttttttaatagtcccttgataacctatcccttgtattttctgc
tactttgcttcaagaaaacatggtagcacccaccctgaatttcagtactcgggaggcaga
ggcaggcacatctttgtgcgttagaaagcagccgggcctatataatgagtttcaggccag
ccaggttacatagtaagaccttgtctcaagaaggagggtgtcaaacttattagaagggat
ccaggctctggttttgagtttgtcttaataagtgagatattttataagttgataaaaagc
agaaattcacccaatggtgatgaggtgggaaacagaagctgatagattaattgatggggc
atactctgtgcttttgtttcttttgtttgtcttttgcttaaaagtctttgggatttatgc
tttcaaactctgcagcacataggcattaatgcacgtgatgtccgttggacttatgactag
tattgagatgacttgtacttatgttgaaagcttgaaatacattgttgctctccgccatac
cttcttgtcactttaaagctctctcagtgtgagagtctgcatatgtgtaggtagctgatt
taccccagatagaccttagatttttgagtttttagatttctttacctttcttcgcttccc
acatcacatttttggcacatgtaaagtggataggagggactctcaggtacttttcatttt
acgttatagggttcttctgagcacacgcaggctttggatcacaaagtttgggttgagttt
ttgtgatgccaagtgctagttgtgtgagtgggtgattcatctcttagtgtctgggtttcc
tcatctccttagcatggtaatagttacattgacttttcaaggacttatctggagtagttc
tctcattccaccatgttggctccagggattaaactcatttcatcagtcctggcagcagga
gcctttatcctctggtccccctcacttgcccccgttttcagaagagagggaaaatgtttg
gcataggtaatgatgaactcagtggatccaagaagatttgtaaatcacaaatctaaccaa
gcctgctcatcttgaggaaggatggataaaagaacaaagtaacaaaggagcaaagctttt
tgccctctttccgaaagtcccctaactcagaaaggagtacagataatggttctgtgagaa
catagtttaaagaagattcatgtagatttcttaactcttgaaacctggctattcttccta
cgcgttgcattggaagtagcttgcgtgtgttcacccctcctcattgtttgcaggggtgag
acacccctctctgaatgccatgccagcttgcactgtggcttgcaccgtattaatgacatt
ctatttattctacttgaagaactttttctttaaacctaactaaatggtgacgagtaatct
tctcatagcaactccgtcttgggctccaagactacttatccctgagctactctgctttcc
atattagttagctatactgtccaggctggaagccttgctgtcaccctctgacccccttcc
aggcccctgatcctgctagatttccctctgctcaatcacccatttccctgcaacccacta
cactacactacgtcccttccatccttactgtcccatgccatgacggttcagagtggcctt
ctgtccactcCCTTGGACTTCTCATGCTCTG
Primer
(+)TTCCAGGTTTTCCCACTAGGTA
(+)cagagcatgagaagtccaagg


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