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Mouse element [ mm1900 ]


Position: chr13:15,566,311-15,570,907 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Gli3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGTTACATAGGGTGTGGGCATCtatggtgttaaagcgttttctttgtgacaaggataaaa
ttgtgtttttatcagtaaaataagctgatataactcaccatgctatacaggaagcagatg
tctgccttggcaagttgccattttatagccctggactgagcattgactacacttaaataa
ttagttgctaattaatgagatccaaaaataagttgtcaaaatagaagaagggggtagact
ttttaagttaccaaaggcctagtttttttaaaaaaatctatttcaaataggggtaggaat
tagtattttctaagatcattaattagtagctttcaggtggtgcctcttggcacttgtgtc
tttctctattgtgatgatttctgggagggtgagttgctttgttaaaatgttgccttaagg
ggtacccaaaaactgcataaaattcagttttaccaaggaactaagtgacttgttggttct
taccgggaaccttctttcttgatggggtgctgtctggttcctttgtgtgttatattagta
tactgccccagctcagctaataacaccgtgtatcagttttgaaggggaagattgtggtat
ctgaatttggtgctttgattaaggattcctgatacaatttttagcttttgcagaactgac
cagttttcaatggaacatttagcatagaagaagatgtatgtagctagctcagggatgttt
caaattcaagccacagcagagttagaagtcccgaggaccctggcgtgaacctttgtttac
ccagtaagcatttgtctttgtattagtggttgagaagatagacgtccactcctcatgagg
cttccagtctagcagggagatgtatgttcaacgaagacttcttaaacacagttctttatc
attacagttggagatgggataggttctgtgggttgtgaattcagtgttcaggaatacact
ttattcattctatacttacgaatataattgagtcctctcatggatacatacatagtgacg
aacaaatataaatgtgtagagcagttatttggaagctgcagtgaccttgacagttagtgc
ttcttcaaatacaggctcttaggtgttaccgtccatgacagatgcattgtgtcagaagta
gaactggaaaatcagatctcttagcaagcacatagcaatctgggtagtaatggctattca
gggaaactctttgggagtaggggtgatatagattgggtcaatcattcttacgatatgctt
ggtttttgttttgattttggagacagtgtgtcacagtctagctttttggtggcctggaac
tctgtagactaggctgacctggaactcacaggaactctcctgcttctgcctcctgagtgc
tggaattgaagttgggcgccacccccaacccacctccagccttgtgatatactttaaaaa
tgaagtttaaagctgggttcaagttgaggaaggagtattgagagtttgaggccaggctgg
gctgtgtgtagcaaggccttaccttaaacagtaaaatcaaccattctgaggtttgtgtat
gtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgttactgttaat
gttactatgcatgtggagttcagaatgacttggggaagttgattacatcgtataggttcc
aggaatcaaaatcaggttgtcaggcttcacacgtttttcttagagacacaagcaactatg
gaaaagttctctttaggggtttttattcaggctcatggaggagttttggacggtctgtga
tcccttgggaattaagtgtttctggggtaaagattttttgtttcttctcaaaaagcagag
ggcttctgttgtcgcctctaaactgagagggagtccaggttggccaaggttgtgctggac
agctcctggggcagctttaggtaggctgtgagtgctgtccaaccccttgctgtttttgtt
cttgtttttcattgtgttctctgaatatgcttctcaattcagagtgggtcttacagttgt
taagtatgtcttgtttctttttattctccaaaacactgtggtttagagtgaatggcaata
gacactctaggaaaagatggaagtcaggaaatagccagtgccctagtgttttatgtgtag
actttggctctgaaaccataactgaaaggcttgacttcttggtcaaggggcatctggtgt
acataaagagcgtgagttaaagctgactaaacatacatgctctggcttttgcactttggc
cagttaaacagcttcttgttttatttcactaatcactgttttgattgaacattgtggcat
ctgctacatgtagaaaaataagccaatcagcagacagatgaagcacctaccttgggagtt
gcagcctagagagctggaagaaaacatgcccgagagtggacttttcatctttgtctcctt
tgtagggatgagtattctataagggaaggatgcgctagtgcgaagattgatgaataagat
tagtcggggctattgtcccatgagtggagctggtgaaggacaggtgacctgaatgtgcct
gtagttgagtcttcatgtctgtgagtgatcccagtctttgttagcctcactttttgtccg
gcttttgtggtggaatggagggctattgtcttattacctttgtttaggaaattaacccaa
atgaattagtgttttccttttcaaaaaacgtaaagaacacagtttgtctggatgctttga
ggttaagatgttcaaggcaatccagtgccttatggaagtagaaatcctagtctactgagt
tattggggggctgtgggtaggcttgccacttggtttttaagatgtctaattagtaattac
aaactttcttctgacttagaagttctcttagtgttccttcctataaagttgaccacccaa
agggaaatgaacagaaatagcttaaagaataatgtggcacttgggttttatactgtagat
aattgaaaattgaagtatttagaatttattatttctcaacctgtgtgtccaaccctttta
gcacacctctatctctgaaagtttttatattaggattcataacagtagcataattacagt
tatgaagtagcaacaaaaataattttatggttgggggggtcatcacaacataatggactg
tattaaagggtctcagcattaggaaggttcggaaccactgacttagataatttgataaca
agtgatcagaaggaaacttgtacatgacgagctgttctgttttcctgtgcagatagcaaa
ggctggggttacttaagggacgtgaaaactcagctccatgggactttgacgggctcctta
atttagttacgaaatgtttttttccagaaaaccctttggggaaatgtccattcaggtttt
gctaaacctttaggttctcctcaggtagaagatatagaagacttttgggtaaaggtttct
tctgccattttgggaatttgatggcactgtggtgttttatagggattcctttgagaaaca
agctgaagtaatgagaagacattatggaggcccaggcccacagctctacggcgactgaga
ggaagaaagctgaaaattccattgggaaatgtcccacgagaacagatgtcagcgagaagg
ccgtggcctctagtaccacttccaatggtgagtggccccacaactcccagcagctaagct
gctgtcactgctgtgttctctgcatcccctgaactgaacatccatgcgtggaccagtgat
tctctaagagaggttcacatgggacagaggatggtgtatagggtgggcagactttagtca
tctctatcttgacatccaagctgcttgttttcttcagtctactttgagatataaattggg
ataggttaggttatttataaaaagaagttcctgttttggcattttgaaaatcatcttgat
tttaaaatgctttgcatttcacatggaaaatctatagtagtcaaaataatgtagacattt
ttgatttgtggcaggatttctcccaccccaaatttaaagttgtctactggaaaggatttt
aaaaacttaacatctgaagttttaagtccatcttaagtccataaacttcattgttggttt
tgtaaatttaattagttgaattgatttcagagatagcacagaatcaacgttttttacact
ttaagcaaagtattgagaggtattttaattcaagcatagagcactccagcctccctcaac
cgggaaaaccaggctgaaggtttgtggcgaccttctcttccattccaggttttcccacta
ggtaggccatccatgtctttgttttgtagatttcaggcatgcctccttgctctggagttt
tctagatttcaggcatgtctccttgctttgagttttgtagatttcaggcatgcctccttg
ctctggagtttgtgtttatagatttcaggcgtgcctccttgctctgggttctactccact
tttctgtgtacccttaggaagaataagttgtctgagttaaaaaatggattcactttaccg
gaatgtgtgtaaaaaTTTGTCTGTATTGCTCCCCTTT
Primer
(+)agttacatagggtgtgggcatc
(+)AAAGGGGAGCAATACAGACAAA


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