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Mouse element [ mm19 ]


Position: chr3:87,942,027-87,944,987 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Iqgap3 - Mef2d

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGAAAAGAATACACTCTCCTACCTCAgaaattctttttaaaaatatttattagtattgta
tggtgtgcaggggagagatgttatgtgtgaagctcagaggataactctgggaagttgctt
ctccggctggtaccgaagcacctttatccgctgagccacttcgtcggccttttgcagtcc
ttctgaatgtctctgcaattcttcctgttcctatagtttctaacaccccacttcgctttt
cctttctccagtaacaggccctgagctactggccctttaagattgccttcttcccccacg
tgctgtctggttgggctggcgatgctgacgcatgcttgacgtcaatagcagctggtggag
tttgggcacgaggagagaagttgggatgggggttggggggagcggagcaagaaggcgatt
catttgcatttaaaggggcctctcttgagttaattcgcgctttacagaaatacgtcctgg
gcaaactttctgccctaggctgggaatagaggcaagaaaatggcgtgatacaacttaagt
ccaaggctatgagtttggtatgttcttccgcggaaaaagagaaatagtccgtcggtgccc
aagctgggagcacgtgacccggagggggtggaggcagaagctgggggtgggggggagact
actgtaaggttgtgtttgtctgcccccacccccacatcctgcccacccaactgcagctgc
caccacatcctgcccagccgggggcagggagctcctgtggggggtacacggacccgagac
cgctctggcaccattcgctgtccctcagctccagggccctctgctcttgtccccaggtct
ggtcccaaggcacccggttctcagcatagggtactactgtgccacacggacctggacaag
tttctggcggactctgctaccctttaccccaactctggcttgaagtggagttgtaggacc
cccagactcaacccctgtccttatctaccatggttatgaatgcagaaatgaggtattcag
cagagtttgcacaattctgactcacagggctgcgcgaatacatttgctaagcgcgttcca
cgccagctctgcatccccgcaggaactcaggagctggtgaggaataccttaggaaataaa
caaacccagcaagctagtgcgtccagaggagacaagggcggagtggagcgtcccaccttc
ccgcggagaaaatacacgcccacctgctgagggtccggttcgcaagcttggtggcagatg
cggggaagaattgggggtctttgcggtgatcatccaaaaactaaaggaaggatgactcgg
tggtggagtcgcgggtggaggtggggattgagaactgtccagatggcgcaggggagggga
aggtgagaggaggaggatctgccaagcagctcaccagactagaggggaaggctagagcac
ttttcctaggttgagtaaggactgactgccaggtagaagagggtgctgagaggaacaggg
acctttccagttcaggtgaactggagaagcttgagaaggggtggataaaggaggattaag
ttttatttgccagatagctttgtgaagatgcatgtgagtttacagggtgttctttttagg
atgtcggtgggtatcaaggttttacagcagggctggaaggtgacttttctttagaacaga
tgggcgagatgactgaggcagtaaagcgcttgccatgcaagcctggccacggaagtttga
tcctgaaacaaatggaaaagtggaagatccacgccgtagaattatcctccgacatctaaa
tatgcagcatggtacgctaacagaataaactgattaacaagaaatggtgcacagccagag
gtaggagaggaagcacgagactcagtcatttgccacccagaggattctgggatgggaaat
tcaagggccagaagaaaagaactcagagtcactttcaggaagtccaattttcatctaact
tccaacattaccttggcccttttcagtctttcgtggaaatcaagacctctcccaagacgt
tttcacagtctgagttttgtcccacttgtagttttactgccccctattctggtctcctgt
gagttgtcaagtcagcagtgagtgtccagggcccccacctccctgagctctcggagctct
tcctgctagtcttttaatatcttccccaggtgactcaccttccttcctcattccttttta
aaggactcaacattccaggtctaaagagggccagccaaccaatcacagccatggacggcc
agcctcatatttgagattggctgggatcatggctcgctggaagctcaccaagttagttag
ggagaggctggggagggggattctgggaaaaaaattttcttctggccttggttatgtttt
gagaaacaaactgagttaggttctctagcttggagagcctccaaggttgaggcaggttga
acactcctgagggcttagctgtcccgggcccatcctgttttgttttcctacaagctggga
cccaatggcctgaaggctgtgttcccaggcctgttcctaagacgtcttttccagcagccc
tgaatctctccagtctcaacattctgcttttcccgacgtcgggaaacagccggaaaaata
aacaccctgatgactaaacggtttctccagctagagcctggggaagcactaaaaatagag
gccacaagtgaggggaggttccccacggggagggcactttcccattctgctcccaccata
gccacaagcaggaacaaggctgtgttctcccagggcttggggaagggcagatgccttcac
tcaagtcttgggggcaaaccagactgctcaaggagtactggcagctctgtgcccccaccc
cccatactactaggaaaactaaggagcaacatttggggaccatgtgtgatcctacataaA
TCAGGCTTCTGGAAGGAGGgG
Primer
(+)GGAAAAGAATACACTCTCCTACCTCA
(+)CACCTCCTTCCAGAAGCCTGAT


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