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Mouse element [ mm1898 ]


Position: chr13:15,523,946-15,528,667 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTTAGGAGCCCTTTTGTTCCTTttcacatgttatcaggtgattaagatagggctgaaaat
tctggatgaaattcagggcaatctatcagaagtaaagcggggagagagagtaggagcaaa
gagaaaatatggtacacaaaataagtatacaggcctttccaagggtcttgaacccgagga
aaagtttaggtcaggtaagaatacctggggagagattagaaggaaggaaaagaaaaaaga
aaagaaaaaagatcgattagcggaggtctctaggagatactcgtcactagatgagctcag
gaagccagctcttagtagttctgaagcagatgaagaattctcctctgaggaaacagactg
ggaggaagaagcagcccattaccagccagctaattggtcaagaaaaaagccaaaagcggc
tggcgaaagccagcgtactgttcaacctcccggcagtcggtttcaaggtccgccctatgc
ggagcccccgccctgcgtagtgcgtcagagatgcgcagagaggcaatgcgcagagagatg
cgcagagaggcaatgcgcagagagatgcgcagagaggcaatgcgcagagagatgcgcaga
gaggcagtgcgcagagagatgcgcagagaggcagtgcgcagagaggcagtgcgcagagag
gcagtgcgcagactcattcattcccagagaggaacaaaggaaaatacaacaggcatttcc
agtctttgaaggagccgagggtgggcgtgtccacgctccggtagaatacttacaaattaa
agaaattgccgagtcggtccgtaaatacggaaccaatgctaattttaccttggtgcagtt
agacaggcttgccggcatggcactaactcctgccgactggcaaacggttgtaaaagccgc
tctccctagtatgggcaaatatatggaatggagagcgctttggcacgaagctgcacaagc
gcaggcccgagcaaacgcagctgctttgactccagagcagagagattggacttttgactt
gttaacgggtcagggagcttattctgctgatcagacaaactaccattggggagcttatgc
ccagatttcttccacggctattagggcctggaaggcgctctctcgagcaggtgaaaccac
tgggcagttaacaaagataatccagggacctcaggaatccttctcagattttgtggccag
aatgacagaggcagcagagcgtatttttggagattcagagcaagccgcgcctctggtaga
acagctaatctatgagcaagccacaaaggagtgccgagcggccatagccccaagaaagaa
caaaggcttacaagactggctcagggtctgtcgagagcttgggggacctctcaccaatgc
aggcttagcggccgccatccttcaatctcagaaccgctccatgggcagaaataatcagag
gacatgttttaactgcggaaagcctgggcattttaagaaagattgcagagctccagataa
acagggagggactctcactctttgctctaagtgtggcaagggttatcatagagctgacca
gtgtcgctctgtgagggatataaagggcagagtccttcccccacctgatagtcaatcagc
ttatgtgccaaaaaacgggtcatcgggccctcggtcccagggccctcaaagatatgggaa
ccggtttgtcaggacccaggaagcagtcagagaggcgacccaggaagacccacaagggtg
gacctgcgtgccgcctccgacttcctactaatgcctcaaatgagtattcagccggtgccg
gtggagcctataccatccttgcccccgggaaccatgggccttattctcggccggggttca
ctcaccttacagggctaagtagtccaccctggagttatggattgtcaacattcccctgaa
atacaggtcctgtgctcaagccctaagggcgttttttctattagtaaaggagataggata
gctcagctgctgctcctccctgataataccagggaaaaatctgcaggacctgagataaag
aagatgggctcctcaggaaatgattctgcctatttggttgtatctttaaatgatagacct
aagctctgccttaagatcaacggaaaagagtttgaaggcatccttgataccggagcagat
aaaagtataatttctacacattggtggcccaaagcatggcccaccacagagtcatctcat
tcattacagggcctaggatatcaatcatgtcccactataagctccgttgccttgacgtgg
gaatcctctgaaggacagcaagggaaattcataccttatgtgctcccactcccggttaac
ctctggggaagggatattatgcagcatttgggccttattttgtccaatgaaaacgcccca
tcgggagggtattcaactaaagcaaaaaatatcatggcaaagatgggttataaagaagga
aaagggttaggacatcaagaacagggaaggatagagcctatcttacctaatggaaaccaa
gacagacagggtctgggttttccatagcggccattggggcagcacggcccataccatgga
aaacggggaatccagtgtgggttcctcaatggcccctatcctctgaaaaactggaagctg
tgattcaactggtagaggaacaattaaaactaggccatattgagccatctacctcacctt
ggaatactccaatttttgtaattaagaaaaagtcaggaaagtggagactgctccatgacc
tcagagccattaatgagcaaatgaacttatttggcccagtacagaggggtctccctgtac
tttccgccttaccacgtggctggaatttaattattatagatattaaagattgtttctttt
ctatacctttgtgtccaagggataggcccagatttgcctttaccatcccctctattaatc
acatggaacctgataagaggtatcaatggaaggtcttaccacagggaatgtccaatagtc
ctactatgtgtcaactttatgtgcaagaagctcttttgccagtgagggaacaattcccct
ctttaattttgctcctttacatggatgacatcctcctgtgccataaagaccttaccatgc
tacaaaaggcatatccttttctacttaaaactttaagtcagtggggtttacagatagcca
cagaaaaggtccaaatttctgatacaggacaattcttgggctctgtggtgtccccagata
agattgtgccccaaaaggtagagataagaagagatcacctccataccttaaatgattttc
aaaagctgttgggagatattaattggctcagaccttttttaaagattccttccgctgagt
taaggcctttgtttagtattttagaaggagatcctcatatctcctcccctaggactctta
ctctagctgctaaccaggccttacaaaaagtggaaaatgccttacagaatgcacaattac
aacgtattgaggattcgcaacctttcagtttgtgtgtctttaagacagcacaattgccaa
ctgcagttttgtggcagaatgggccattgttgtggatccatccaaacgtatccccagcta
aaataatagattggtatcctgatgcaattgcacagcttgcccttaaaggcctaactaact
aactaactaactaactaactaactaactaactaactaactaaccttataccgctgcacag
gttcaaaccttggcagccacatctaatgattgggcagttttagttacctccttttcagga
aaaatagataaccattatccaaagcatccaatcttacagtttgcccaaaatcaatctgtt
gtgtttccacaaataacagtaagaaacccacttaaaaatgggattgtggtatatactgat
ggatcaaaaactggcataggtgcctatgtggctaatggtaaagtggtatccaaacaatat
aatgaaaattcacctcaagtggtagaatgtttagtggtcttagaagttttaaaaaccttt
ttagaaccccttaatattgtgtcagattcctgttatgtggttaatgcagtaaatctttta
gaagtggctggagtgattaagccttccagtagagttgccaatatttttcagcagatacaa
ttagttttgttatctagaagatttcctgtttatattactcatgttagagcccattcaggc
ctacctggccccatggctctgggaaatgatttggcagataaggccactaaagtggtggct
gctgccctatcatccccggtagaggctgcaagaaattttcataacaattttcatgtgacg
gctgaaacattacgcagtcgtttctccttgacaagaaaagaagcccgtgacattgttact
caatgtcaaagctgctgtgagttcttgccagttcctcatgtgggaattaacccacgcggt
attcgacctctacaggtctggcaaatggatgttacacatgtttcttcctttggaaaactt
caatatctccatgtgtccattgacacatgttctggcatcatgtttgcttctccgttaacc
ggagaaaaagcctcacatgtgattcaacattgccttgaggcatggagtgcttgggggaaa
cccagactccttaagactgataatggaccagcttatacgtctcaaaaattccaacagttc
tgccgtcagatggacgtgaccCACCTGACTGGACTTCCATACA
Primer
(+)gttaggagcccttttgttcctt
(+)TGTATGGAAGTCCAGTCAGGTG


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