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Mouse element [ mm1895 ]


Position: chr13:15,505,384-15,510,451 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCAAGGTAAGATTGGTGCTACAttaagtatcccaccacagagaatgggttaagccattca
aattgaaggtagaaagtatatttcattttgctctgttatggtttgagtttgaaatgcacc
ccaaagggcgtcatcagttttgatacttcatccctaaataatgacactcgactgggaagt
ggtagagcatttgggacatgcttttggtttccggtgatgtttgttctctgcttcctggtt
ggtcacaatatgaaatgtagtgacacactctcctgcctcagccatgccttctctgctgag
gcagactatattttctgaaaccgtcaacaaaaacaaatctttgctccctcatgtggtttc
tgttaagtatttttctcatagcaatgaacatgtaactaatatacagtctccaaagagcgc
attaagcagcctaatggaaatttgcacgactggactaaagtgagggctcctaaccacttc
tcatggtgccctctgtagggactctggtcaacctgggtgcaggaagctatgtgaaatcac
ctgtggtatcagaaaatagaatcctatggaggaatcctcacactgcccgattaaggcctg
ggggggaaaggtgattagaaggttgtctaccaaaattatcttcctggaccctcagcccaa
taattggaacaaaggcacgtatttggggtctgccatccatgaggtgggggagttgtgcag
gctgcagtgtccacagaagtcattgccaatttctcctgagaaataaaggtggtgatgagg
tggcaggtgccttacaacttggatccacaaagaattggcaaatccgttttgattttcaaa
ctaagaatgctgtatgcatggaattactgagtatacgacctctgagaatctttttcactc
agtataattctttgaagattgatattaatatattagttgtatatgtgcctaccatcctaa
gtaatgttctaacactgagttaaacaccaaggttcagtttttctattattgagtaatatt
ccatagtagagatgtactacagtataaaagtatacatctttaaggatgtccagctgtaca
tagttgaggtctttaactgtgctaatatgaacattcacctacaaggtttgtatatgtttt
catttctctgggatcaatgccaagaatgtaattgctaggtcatatggccatggtatgggt
agttgataggaaactgccaagctgtttccatggtgtctgcacaattttcctctaccaact
tcaagaaaaaaggtatgggttatgttttatgggctcttgcttatgttaggatgtcttttt
attgcgtcacatatgtgataaactgacagggaaagtatgcttgcgtcaggatagattttt
cttcaaattctgtataactgcttccaatgtcttcttagagaatgtgctttaaagaaatca
gttcctagccttagttttactcctttgcagacaaccagtatgtgctgttgagaaattgta
cttaatattttctttgttttgtttcaataaaaatattgcaagacatgctttcaaactctt
gtcttcatccatgttccatgagatcttcagtttctaggccttgtcttcccattgcgctct
ggttgttgcttttgttctgagttctatcattttctccctcttgtatcacatccctggcct
tgccttgtgcattctatctctttgaactccaggggaaaggttttaactccttcttttctg
tcaatgatcctcttgtccacattgtcagtccagctttgaccacttttaactagatttaaa
ttttgtgactttgatttcatttcaacccctctatgtctcaatcatctttcactttatgta
accccttcatccacccctcagaaaatacccaaatccatcccatccctccaaaactgcttc
tgaaagcacaagttttcaggtcaaaacttagcaaaagtgtttcttttttaaactgttcaa
aataaatcatctttaaaggcattcttcatcctaaaatttcaaagtggtatttctttatcg
tgtactgtgttactgcattgttttaaaatgagaaaaaattaacaggaaacaaaattcact
aaattcctctttttcagtacaccattcagtggtatttagcacatttacaatgctgtgtaa
tttctccagcggctgctgaaatttgaaccactttgcaccccctgagctcgcgtctctagc
tgcatatgtagcagaagatggcctaatcggccatcattaggaggagaggcccttggtctt
gcaaagattatatgccccgatacaggggaatgccagggctgggaagcaggagtgggtggg
ttggagagcaggatcgggggagggtatagggacttttgggatagcatttgaattgtaaat
gaagaaaatacctaataataataaaaataaaaaaacaagaaatcctgtaccaattaagta
cacctgctttccacccctctcctaatgaactgcactcagtcttgttggattcacttatac
tggttgtttcataaaattccatcattcagtctgtagttgattgtgcttggctttttaaaa
tgctacttctttatattttatttatattatatttatattttatatttttataatagatat
gattatcagagtagatttatgttcatagcaagataaaatgaatatgccaacttctacaca
gtactcactttcatccatgaggggcaactttcaaaaggctagtcaatgcttaaaagtcat
cacaggagtaaaatttctttatacacaccgtgtaccatcattttctctacacataaattt
ctaccttctccgtagaagctgaaatttacagtttctctttggcatatgcaaattgccggc
atccgtctcatattctcaagtattgtttttatctagtaaagtgagggtcacttgaacaca
agcagagtcatagtgagatgcttgatctggtctgaaggtgattctaaggaaggggcctgg
acatggtagatatggggaacagaagaatggcttccctgcaggcaagaaggcaagaggaac
ttctgttctttcggtttcatccacttatagccactttcatccacttatcagcaacattca
acacctgagtgctatacttactgcaacagctgagccgatactgacacatccttatcatgc
aggaccgccaacattcccctttggggttgaagtttgtatgggtttggacatatatgtagt
gatatgtgtcactatatatgtagtgaaatgtgtcactgtcagatcaggcagagttccctg
gctgtcctaaggatctctgtcctgtgtctgatatagttagtctctttgttcatttgttga
gacaggcctcactacatagccctggtcagcctggaactcactacatagaccaggctggtc
tcaaacccacagagatccacgtgcccctgcctcccatgtgctagaattaaaaatcagaac
caccaagcccagcattgtgtggcccttttttgtacattaagattttatgggttatcatta
gtcaatgccacatagaggaatgtggttctgatatttgtcaaggaataacagaacagggtc
atcttattgttctttccttggcaatggaaataacacctttgctatcctgcagttgtaggg
tccccagggacccagaggaggttatcctaatgtcctgacctcttcctccctcttgcactt
tctgactgaaaagcctgccttactttcaggaaaaagagagagagagagagattaaagggt
ctctttctttcttttcctctctctctctctctctctctctctctctctccactttaagta
aaacagcgttgaaaatgggcttgttctgaaaagacagaaagcaaaggaaacacttttgaa
agaaacagactatgagatgatttctctgagtggaagggaagaagtgccctgcttgaaatt
gaagttcaggaactagcagccagggttacattttattctgtcattagagaaataacacag
gcaaattctttaactgttgtgtacattaccagggcaaaataataatacttcacagtgtca
ttttgagacgtaaacgaatgaacactcatgtgttagccgtcagcacagcactgagaaata
cctgcatcagctgacggggcagctcagttgtcaagcacttggtgagcataggaaaggccc
aagttcaagacccaagagccaggaagggaaaagcaaaaccaagagaacagaaaatattat
atttaagtatacatttttaattaaattctaaaacaatgattatttgtactccatatttta
tggcaattcagacagccattaattatcattactttttaaaatttctttgactttgagtag
tcaatacatgaaggcagcagcaacttgtggctgatttctttcttctaaacccagcgttca
ttgctaatcttacttcctgtactatctgaaaacctccttgcccaataccatttgagtgct
atttcaattcccacatgctccacatagcttcatcacaaagtatgcttttaggcagagttc
ctcttttcttgaacattccatacctgcacgggagagaagcagggagatcaacccctaggg
taagtcctgcaacgttcccagtaattcattctccaagagacagagatgcctttgaagggt
cagttccccagggtccttccaaactcttgttgcatgagtcgaactcagtttacttccagc
tttgaagagggtccttggcccctatcactggaggaatgagcatattgaagaagccaaatt
catccccaaattccaatatagatacatctggacaggaagtcagcatgtatgtctttaaag
gaaaattatttttcaagagaaaagttgataagacgtggaaatcaaagaccttctagaaat
attctgggggagtccaagcaggctatacagatcttacagaatatgaaataaaggtcatgg
agaattttaggggttactcattggaagggggccacatgtcctccatagtagctaaaaagt
cttcttAACACCAAGAAAAAGAGTGGGA
Primer
(+)gcaaggtaagattggtgctaca
(+)TCCCACTCTTTTTCTTGGTGTT


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