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Mouse element [ mm1891 ]


Position: chr13:15,460,395-15,465,365 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AAGGATTCCTGTGGTTCTTTCAataagaaacacccctgtagtctcatgtatttgaatgct
tagtcatcagtgagtgaccctatttgaggactagaaggcatggccttgttacagtaggtg
ttgccttgttggaggtattgaggattcaaaagtccatgccaagccagatctctctctccc
tgcttcctatagaccaggatatagaaaactcagctactggttcagtacctcaactactag
tatatctccatggtccctgctatgataatggaccaagcctctgaaactgtagaccccaat
taatttctttgtaagagttgcctttgtcgtggtatatcttcacagcaactatggctgcac
cagttagaacagtgatgaaaacaatcccatgtagtcatccgtgttgcatggcggtcaggg
gtctggcaccatcttgagaggaaacctgtctttttttttttttttttttaaacagtacag
ttgttattcccctcccagtataccatatgagagttcctcatctcattcttcctcccccac
ctccaagagattgtcccacacccccacaactcccacacaccttgccagacctcccctgtt
cctgggaccctcaagggttaggtacatcttctctcactgaggccagaaaaggcagtcctc
tgctatatatgcccgggggcctcagagcagctagtgtatgctgcctggttggtgtgccag
tgtctgagagatctcagggacccaggttaattgagactgctggtcttcctattaggtttc
cctcctcctcaacttcttccagcctttccctaaaacctggcttttaaaattgagttatcc
tgtgtccctgagaatagggaacaatgacaggcttgaattgaacttgccctagctggcatg
gagaggggaggggagaagtggaggaaacaattctggggatcagttttagaaagcaaaagg
gcctctagccttgacttggccactagccactttgccctttgacagagcaaagacttggct
ctgtcattgaagggcttaaaaggtggctctacacttggtggtactggtagtgttgtagat
aaaactgtaagcaaatgttctggagtggagagggttgccaatctcctcccgtagagctga
gagaatcttaggaggtatggagtttttctgggcaacctagatgagccaaaagtattcagg
ttcccaacaagaggacacaggtctaagccaagaagggggtcttcctccagagaaagccaa
gggaactggtgcagccacagttgcctctggaagaaggagcaacacagcattggtatgcag
tctgatgggctgtgagcctgcatgaagttgtgtgtcatctcagaagcagtgactgcaatc
tcaagactccaacaaacaaaactgacagaaacacaaaaggagacacacagtaagatacag
tcagataaacacagaataaagataaccaaggtcagccaccatatatattcatacacttag
accaggggagtccagtaaggtttcacatgaataccacacaggatctaaggtcacatctga
ctggcctcccatcttgtgtcctaactagatgccctcctgcagatcaaatttatccccaga
agtactcagatcagatgaattttgaggtacctccagagtgcattgtagtgatcagtctga
gatgattttcccagggtcttggaacatcacagggtatccactccctaggagtcttctcca
acttatgctcttttccccacttctggggtcccaaaacccctaagtattagggtccagtct
ctgcagatctcactgcagcctctaaaatgttactgggtgcccaccagaaacaaccactca
aacccagttatagccatttgaaagtctttattctagccagctgggactacactcaagcat
ttggaacagaagtatgatgctgaacatttagaggaggggcattctaaaaacaaaaaccac
atcctggtatctcactcggcagctacaggaggaagttttgtacaagtagccagtttaaca
gaagcaaagttagctgcagcacaagagagttgaagaattttccatgagacttcccatcaa
ggagatcaaattctagctaaacctaaaatggcctcaacaacaatacaagatggaggaatc
tctgcactgtcttgtcctgtcacagtaggaaaatatgaattctctctttggagttcttag
tctcgttagtaaaataatttaaaacacagactcataaggaagctcaaagataattttatc
agagcttaagacaaaaacaagccaggcaaagtttaaatctcagaagctgcccaagagaga
agaagggagagagagaaagagatggaggacatgtaagagagaatgtcatgtctttttcaa
tggagtaagccaacatctactggtacagggaggggcgcttcagagaccagatagggaaag
cccaggccatcaggaaaagcatgctttggccatctacacaaaaagggggaagttggactt
tctggataactgagaaaactgggcagtctctgaagtattcttggaggaatttttgtcagc
atctgcatgaaggagaggtctcctgggagtataaatctcaataaggacataatatccttt
agcatagtttctggtgaatcaagttttctggtgcttgattggtccagctggcttaaggaa
aagacaatagaatgtattgctttgaggaagcttagaatggctccacccagagcctgaggt
agaatttagattctgcccttgaaccaaaggaagttagctttctcttaatgggcctcaaca
aagccctagtatttccctctcataagatagtaatttagaccctaaagtgggggagagctg
atgtttacttttctattgttaccaaggaaacagcaggtgaaattcaaaatccatcatgga
aggtaggggtaggggttcaccctcaatgttctccaaatctattgatctctgaaatagtcc
cacatcagagttgaaaccctaaaaccacttagaaaccagtcaaaggaccaaagcccctaa
gtgcttctaaaacttctgctttcaggatagaataaatggtgtttctagttctgtccaaag
gtataaatcaaggcccttatccctaaattacttggccatttctatctcttatcttcatcc
ttcctccttctgaagagaatttcaactgccattagagaatttgagtaatgaaagatctag
cttcttccagatgttatatatttggggtatcttccagtggacctatctaggggacctcaa
gtgtgcaccagtgcttttatttgtataacaatcaggtgtcatgaagaaagaaagcacttg
aacttcatagagatctgaaaaagaaggagtagaagcaagaggagcgagtgagagagataa
atactgagtaaattagagagtccagagtcttggttcccgctctttaaactttcaggggtc
gaaggccaaccatggggtagatttcagcatcttaaatgacctcagaggctgttaatccca
ataacaatggcagttattgggttacctgataaattgaaaataactctagaatttaagaac
tggctaaagcaaaagggaaccctactaaaacctttcctacagcatgaaaacaggctctaa
aaattgtaagaagctgttagtggtttatttctagaaatgcagacttaaccactatctcac
tccccatacaccttaatttgcacttcataacacctttagaggaagaaagataaagattat
tttaaccaaatatgtttcagaaatgtttaagtattacacaaacagtgaaggactatcgag
ttacgagacccaacttctctgaaaataatttaaaaagcagttcagaaagtcagaaagtcg
gacagctaaggagataactataagctatcatgctaggaccttatttggatcctaaattgt
atcctgaataatatttggaaaaaaaaaaaaaaaaactaaagtccaaagaaagtcagtaca
gcctttggaggcaggtttttcttgggggtcatttactgaagattgaggaaatggcctgag
gttaattaacactttcagttgcctcatagaattagagatctaaatttagtagcactgtct
cattctccaaactttactctgaagcacaaagaactgatcttccatgtaagaatgaatgga
aaaaatggagagctcttcagaggcttagagcacatgtgctcttatggaggacccaggtgt
ggttcccagcacccccatgacagcttacaaccatctatgactccaaatcccaggggagca
catgctaccttcctttttttcttttacttatgagaatgtgatataattacatcatctctc
cctttcttttctccctctaaacaaacctatatacacttatgattttcttccaaattcatg
ccctcttttttcaataactatgcacacacgtatatatattctaaataaaacctactcagt
ataatgttgctcctatatatgttttcagaacatttagtattggagaaggattagtgtgct
cttccttagagaagactttttcctccctctcacaccatcactcagctgcctggagttctt
tttgtaaggttgaggccttgtggcttttctctgttaacacctgtccattgatgctattct
tgttcagctcatatttaggtagtcatgttggtgagtcttgctggacgtagcttctgacat
ttctaggagacctaatcttagaccaaactccctgatcttctggatcttacaatcattctg
tctcctattcttcaatgtgccctgagccttaggtgcagaaatgttttgtagatgtatcca
ttgagactgagctccacaactctctactttgagagttatggctatgattttctataatgg
tctccatctgttgcaaagagcatttttttTTTTCTTGTGACCTCCTTTGGT
Primer
(+)aaggattcctgtggttctttca
(+)ACCAAAGGAGGTCACAAGAAAA


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