Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1890 ]


Position: chr13:15,450,756-15,456,278 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCCAGAAGTTAGGCAAGACTCCcagttgaggaatggggccacccctcacctctgaaattt
taacccagaatttctcctgtctaaaacaatacggggacaaagagtggagcagagactata
ggaaaggccatcaagagactgctccacctggggatccatttcttatgcaggcaccaaact
cagacactatttctgatgccaagaagtgcttgctgacagcagcctgatatagctgtctcc
tgagaggctctgccagagcctgaccaatacagatggggtgccaaccattggactgaacac
agggactccaatggaggagttaggggaaggactgaaggagatgaaggggttttcaacccc
ttaggaataacaataatatcaacctaccagaacaccactaccaccactcagagctcccag
ggactaaaccaccatccaaagagtacacatggagggacccatggctccagctgcatatga
agcagaggatggccttatctcacacaaatgggagaggaagccctttgtcctgtgaaggct
tgatgccccagtgttggggaatgctagggaggtgggacaggagtgggtggtggggtgggg
gagctccctcatagaagtagggggagagggttggaatagggtgttttgggaggggaaact
aagaaagggaataacatttgaaatgtaaataaataaaatatccaataaaaagttttttaa
aaatgaagtcattagagtatttccaaacctaatacaactgaaactgttaggagaaaataa
gaacaatctctgagcaaaaaccaaatgaaggaatagaaacataaatctataaaccaaatg
cctcggaagaaacaagccctcaacaccttgatctcagacttctagcctctagacttatgg
tgggggctgggggtgtgtatttatttctattgcacaagcacacaactgtgctattggcaa
tcaaaattctcatgaggtagtataatgcaaggggagtcttctttacgttcacagtcagtc
gagaagcagaaacaagagtaagacataccaaaaggaaagctctgttagttgtagaactca
ttggaaaccctgccttgtttttgtggctcagtgagcttgaaaatatctcctgagctggac
aaacatcactagtcatttacatgccaggtcatataacctcaagccaaagccacagaagtc
agtcagctccctacatcgcaaaaaaaaaaaagaacacggagcttgtgtttcctgtaaaca
ggacgatctgaaaaagaaatgaatgaggggcttattgtcttctagaaaatccaccagtga
ggtagggctggatgtcgtctagaaaaggagcagttgttgctagagaagtctcaagctcag
aatcaggaagggaataatataaagttgaccttcagagagaatgaaggaaaatgagcaaca
ctggggaacacatgcctacgcatgtcagcctgcagtggctcaatgttgactgacagggcc
agcatcactgaatgtttgctaatatcttccaagagtgtgaatctacagaactctcgtcat
acaacaaagaggcctgtgagctgctgtatctcctctccattgtcatgcctatcaaaatac
cacttcgcatccccccaataattgaaaatcaataaagccagaaaaatgatttaaaataaa
atggtagtcttcaaactatgggggaaaaaaactcactctgaaacttctcaaacttataag
aaatgaactctctctcggtctagagagatggcttaacagacaagagcactgactgctctt
ccagaggattcaggttcaattcccagcactcacatagtgactcacaatcaactataactt
cagttgatggaatctaatgtcctctcccagcctctgtgggcaccacacacacccatgggg
cacagacctacatgcaggcaatatactactatacatagaataatttcaaaatgtttaaat
aaaactgaaatctagcataaaaatcttcagacgggagaaagatattcatgtttattcaca
aatgagcatgaattacaatagtaaggtccttaggagaatgctagaaatggaaaacaaatt
tcaggaaaacaagagttttgaacctaaaattttaaggctagcacaccatcaggatttttc
tacataccagttctgaaaagtgttactgagggtacgctgtataaaaatgaagcagaaatc
taacaaaggaaagacatagaatgcagagtggaactacactaaacatgaacagaaaagaga
tcacggtgtagccagtgaaagccagaaaatatgacaagtcccaaaagtcacttcaaaaag
aaagtcattaagacagtgttatcaaagaaagatgtcaaagatctgtttctttattttact
tttactttataattgtgtttatgcttgtgtctgtgtgagaatatatgcatctacattttg
gtagcaatggaggtctggaagttttccatcccctggagctggagttacaggcagttgtga
gccactagacatgggtactaggaaccaaatttaggttctctgcgacagcagtaagcactc
aactgctgagctatctttctactccccaaaagtttagttttaagaagtaaactttcactg
ataagagttgctttgtctttaggataaaaaacaatctgagtttgtgcctgcactgctcag
agcagtagaagaatgtataaaatagttctggaaattggtgctagggtagatcaacctgca
aatcttttagtgtcctgtttggactgcacacctgcagatttgctagagcattcacaatgt
taagggtatgatgtggcataaatatgcaaaatcatagaagcacagggaaagcaaggattt
gttgaacagatagatagatagatagatagatagatagatagatagatagatagatagata
gataggtagatgatagataaagatagagagagatgttagatgcataaatatgtagataga
tgatggataataagtatatagatgatagataggtagatagatggtagatagattgataga
caataggtagaaatagctagaagatagatagatagatagatagatagatagatagataga
tagatagatagatagttagataggatagagacaatacatagtcactttgtaagttgtttt
tcattctcagtttaatccccacaataatatgctcctggttatcctcattttacttaggag
aagattaagtatcctgccccaagtcacagaactctatatagtagaatcagcttcctaaac
aggcctatttatgttactaaacattaatagttagctattttctactctacccacatgagg
gatatataaatctgatataaggaagccttcagtgttggtggtagaaatatttaagaatca
ccttaacatttttttctaaagaccagaatctctatataagtcatatatggctttttattc
caaaactagaacatttccttggtttgtaaacatcaatgaaatgccttaaacaattaattg
cacatatgaaatgaatcagtataaaaatcatgaagcctatgaacttgaacattctttcca
ttgagaaaatatctcaaaatgcctgtcaatgtgggaaatggatttataaggaggagggga
taatgatggagtgagagataggagcaattagaatgaatttaatacatgggtgtatatgta
atgtcaacaaatttaattagttaaaataattattgaaaaggaaaagaagttttacttttt
ttgagattataattacgtttctccttttttctttcttccctccaaaccttcctagatacc
cttcttctctctctttcaaattcatggcctctttttcatcaatttttattttatgcatat
ataacatatatgcacatatatatttctaaatataacatattcagtctgtttaatgttatt
catatgtgtgttttcagggaagaccatttgttattggataattaacctatgtgtactttt
ctgaggaagatggtttctccccctcccagcatgcctcagtttcctgtagttctttatgca
gtgtttaagtttcctgggcttctcctcatccacgttggcatgttcgttggtcatgcctat
actcagctcatagtcatgttagtgaggcttaatggatgtgacttctgacattgctaggag
acacaaatcttaaaacaaactctgtgatcttctgggccttacagtttttctgtcccctct
ccctcggtgttccctgagcagtagatgcagtagggctttgtagatgtatccatttgggcc
tgggctccacaactctctattttggttggttgtggttttctgtaatggtctccagctgtt
gcagagaaaagtttccttaatgagtagtgaagactgcagttatctgtgggtataaaaaca
agtgtttagattgttgttaggaactgtgctgtttaaagggcaaatgcttagatcattgtt
agtgattatgattgttaatagactcttttaaatgcaaaaagaaaactaatgcaactttaa
aaacagggagataaaataaataagtatttctcaaagaacatgaaaacaacaaaactcaca
agagaagatctgaacaccagtggtctctaaagagaggcaactgcaaattatgacaaaata
caagtacatatccactaggacactaacaaaacacagaaacaatacgtgccgataaggatg
taaaaagaaggggggcttatatgtcactgatagatatataaaataacatacgtaccttgg
gagaaaatggtcagttattgaaaaatgtgagcacagaggtatcatatgcttagtattcca
tctccaggtacagcaaaaccaaatgaagtatggctcctcaggcacctgcatatgagagtt
tataatggcataatttatattcacctgaaagtgataagaacctaaagtatctgttcactg
agtaaatgaagacagtatgctggaccacatagtggaatagtattggaaaataaaaatcaa
tgaactattaatcaatgtttcaacatagatgggccctgaagacattgcgctacatgaagg
gaactagacataggagacaacacagtgcatgattgcacttataagaaaaaaatgtcctaa
ataagcatccacagaaacagaaagaactggccttgcttctggctaggagagtaggaaatg
ggagataacttatgaaaacaggacatctttaggatgaaatatcaatataaaatgtgccca
gttctatgaatggtctaagaaacacaaaattgtacattttgcatatggattttataggat
ataaacttgttttgttgaaaaatttcaatgcccctccatgatctaaaaactctttataaa
ttagaaataaaggggaatttcctcaacttaacaaagaatttctctgtgtgtaactaataa
acttaatgctgagaaactagactcatccccactgacattagAACAAGGGTCTCTCCACCA
CTA
Primer
(+)tccagaagttaggcaagactcc
(+)TAGTGGTGGAGAGACCCTTGTT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.