Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs1890 ]


Position: chr5:148,821,355-148,824,866 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR145 - CSNK1A1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGCGTCTCAGGTGATTTTGTtttctttctgcgtgtctgtgtcttccgtttttctacatgg
agtgaccagaagagatgaggccagctgttgtttgggagccccgggatgagactcaagggg
tcgcatctcagcgcagggcacggaggagctcctgtgcagctggaggaaggaagcaggact
cactggcaagttctgggatgcagggagagaggcttggacatgccggggctgcggctttgg
gcaacgccagcctctatgaaccttgacatcctcctctgttggggggtaatgatggcgtgg
cagagggggtaggcccagaggaggatctggggcacccccctaccctccggctcccgggcg
tgtctgcgtccgtgtcatcttccgcccaggcgtgggccaactcagcacaatctggcaggg
cgagcctgggcaccagctgagggaggctgggttccagcccctcgctgcccagcctgaccc
agttgccccaacaggagggcctccaatttctcctggggcagcccagtcacctgggaaatt
ctgctcatagcaagcaggaaaaggccaggactcacgccccaatgacgccacagctgggca
agccctggggacccagagggcctggttccagtcccgcctgtggaacaaactcaaagttgc
cttctctggggctcagtttcccctctgattaccacctcaaccaatccgtgtgttcatttt
ccctttgtgggggcatctaccaagtgtcagacctgcaataagcatcaagcatcagtgaac
ccctatccttagccttgggaagcacccagcctggctcgtctgcagccctgtgcccacgca
caaaactagaagctgctctgcagggccagtgggcttggcttccctctgcatccgcaaggc
ggcaggtgcccagaagagggcagcagagagcgcgtctccagcctcccaggctgaatccca
gtgaaagggagcctgtgaccttggcagtcgtggaaggccaaggccaaggcctggggattt
ttcagcctcactgttgtcaggacaaagtttcagaggtacctctggcacattagcattctc
tttgtcctggacccctgggcggccgacacccccgcactctccagtcccagagcatccggc
cctgacaccctggcctgtgcactgccccccaggaagagttgtcctggggctgctttcaac
cagctgtggccagctctggggaatggaaggagggtactgaggactgaggaaggctgggga
ggagaagccccatcagccacggcaagtccccgccaccaggggcatgggctggtcctagga
gcagtgggcaccctgcagcgccttccactaggtagtgaacgataccagtacgttttctaa
agatcaccgtggtgccatgaggaggacagactagcactcacattcagacacacgctcatg
ttctcattctcacacatgcacactctcatgcacactcatgctaacacgtttcacacaaat
caccccaaactcacacactcagatacactcacactcacatgctaacacagacatatacac
attcatgctcacagtcataccctttcacaccaacacactcatacaaaccagagctcaccc
atttccacacagcttgcacactcgcgaacactcgcccacacttatgtatacacacaacac
tcacacactcatactctcatacactaacacacattcatttttcacacagctcttacaagt
gttcgtgtacacacacttacatatgttcacacagtcacacacacacccctccatatgctc
gcacacacacacacacactcatgcactcacactcgaggccttcctggagtgggtcgggtg
cagtccgagggggcactgtcagctccgctgcctcctgccggggttccagggataatccca
gctctcaggcatctgatgtgcctcccacccacttctgaaaaggatttcagatggtttaga
aaggcaaagcccaattgaagcaggataatgaaaaagaaaaacagaggagggtagagacgt
taaaatcttaaccccggtttctcctggcccagggccttctaagcccagaagtactcagtg
gtctgtgatttcagagcccctgccccaggccaccttttcctggcctctgtcaacggcact
tcagcccttgtgggcctctctacttgtcccaaggcgggctgtgagagggcttctcccctg
ccaccatgcccaccactgcttggggggttagggcaccagtctctggtctcccttcagctg
cctgaaagggggctgggctgaaggcagttcaaatgactgcctcacaaatggtgttccccg
acatcggtcaggctgccaagcaaacatcttggctctacctctgtctttcctcgagatgaa
ctcccagcaacccaggaccctccagtgctgaagcagagttccttgtctcattgttccaga
gtcctagtcttgatgctctacccatctgaccctcagtcccaacacagcccagcacagttt
ctcagtgagggccttattcagataagacacccagggagtgatgatatggtttggatctgt
gtccccacccaaatctaacccccagtgtcagaggtggggcctggtgggaggtgattggat
catgcacggagatttctcatgcaaggtttagcactatcccccttggtgctgttctcatga
gagtaagtgagttctcacgagattgggttgttcaagagtatgcagcacctcccctctctc
tcttgctcctgttcctgccatgtaagacgtgctggcttccccttccccttctgccatgat
tgtaagtttcctgaggcctccccagaagctgaacagatgccagcatcatgcttcctgtac
agcctgcagaaccgtgagccaattaaacctctttttctttataaattacccagtctcagg
tatttctttacagctctgcaagaaccaactaatacagtgacacatcctgatattccaaaa
ttgctcaagtgggtgtttcagtcagctaatgcagtaacatttggtttgccgcaacacaaa
ccaacccaaaatctaatggcttaaaatagcttttttttttttttttttgagacagggtct
tgctctgtcacccacgctggagtgcagtggcacaatcacagttcactgcagcctcagcct
cctgggttcaagtaatcctcccacctcagactcccaagtagctgggatcataggcatgca
ccaccatacctggcttatttactttttgtagagaaaggtctcactatgttgcctagtctg
gcttcaaactcctgggctcgagcaatcctcccacctcagcctcccgatgtgctggaatta
cttggcctaaaatatcaatttattatttctcatgatttccacgtgttaagaataacgctc
aaaatcctaaggaaattgtacactcgaacaaaggattctcagcaaagcaattttacttct
gcgcaggggAGTGCCTTCTCGGCTAGTTGcct
Primer
(+)GGCGTCTCAGGTGATTTTGT
(+)cacCAACTAGCCGAGAAGGCACT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.