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Mouse element [ mm1888 ]


Position: chr13:15,443,690-15,448,235 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGGACCTCCACATAAAACCAGAtacagtgaacctaatagaagagagagtgggggaaaccc
ttgaacacatgggcacagagggaaagttcctgaatagaacaccaagctttatgctctaag
accaagaattgacaaattggacctcataaaattgcaaagtttctgtaagacaaaggacac
tgtcaataggacaaaacaaaaaccaacagattgggaaaagatcgttaccaatcctacatc
caatagagggctaataacaaatatatacaaagaactcaaaaagttagactccagagaacc
aaataaccctattaaaaagtatagagcagagctaaacagagaattctcaactgaggaaac
tcaaacagccaggaagcatccaaagaaatgttagacatccttagtcatcagggaaatgca
aatcaaaacaactctgagattccatctcattccagtcagaatggctaagatcaaaaactc
aggtgacagcagatgctggtgaggatgtggagagagaggagcactccaccattgttggta
agattccaagctggtacaaccattctggaaatcagtctggtgagtcctcagaaaattgga
catagtactacgtgaggatcagctgtaccactcctgtgcacatacccaaaagatgctcca
acatataacaaggacacatactccactatattcatagcagccttatttttaatagccaga
agctggaaacaatccaaatgtccctcaacagaggaatggatacagaaaatgtggtacact
tacacaatggattagtactcagctattagaaacaatgacttcatgaaattcacaggcaga
tggatggaactagaaaatatcatcctcagtgaggtaaccaatcacaaaaaaaaaaatcaa
acaaaaaccaaaaaccccacacatggtatgcatacactgataagttgctattagcccaag
tgcttggaatacccatgattgaattcacagaccacatgaagctcaaaaaggaagaccaca
gtatggatgttttattccttcctagaaagaggaataaaatagtcacatgaccaagtacag
agacaaaatatggagcagagactgaaggaaaggccatccagagactgccccacctgggaa
tccatcctatacacagtcaccaaacccagatgcgattgtagatgccaacaagtgcttgct
gacaggagcctgatatggctgtctcctgagacgtcctgtcagagcatgactaatacagaa
ggggaagctcacagccagccattggactgagcgtgccatccctgatgtaggagttggcaa
agggactgaaggagtttagggggggttgcagcctcatgcaggaagcagcagtgtcaaccg
cccagaccctctggagctcccagggactggactaccaaccagagaatacacatggaggga
cccattgctccagctgcatatgtggcagaggatgaccttgttggacatcactgggagaag
tagctcttgggcctaagggtgttcaaagccccagtgtacgggaatgccagggcaggaagg
agggagtgggggtaacaccctcatagaggcagggggaggggggagggaatagggggtttc
cagaggggagacctagaaaggggataatatttgaaatgtaaataaagaaaatatccaata
aaagaaaaaaaaagagttgaattatataaccctatagtgaaattactgttcagggttctt
aactccattatatgtgcatagtagaaatgccacaaattattcaaccacagcacactttgc
ctcacttacactcactgccatcattgatgctggcttaggatcttatagagcctctagttc
ttcccccttagcctaattatcctgtttagatttctactcctgcgccttcctgctgttttt
cctcaaaatgtcttctggacccaggaccctccatctcagggagacctctttctttctttc
tttctttgtttctttctttctttctttctttctttctttctttctttctttttgtctgcc
tatgtccctcttgcttattccccctcttagagacagacactgaatgactgaatgctgttg
ggggtggggaggatgcaagtgatttgcttcatgttgagacagtgcagagtctagtagttc
ttggttcaagaaaggcaggggtgactttcatgaggtatctatagacagcccaggtgcttt
gataaagttctggcaggtggtggatcccaagattcacctgtaggaccagtggagttgaag
aaatagagaagagaaagttggagttcattatagtatattcaacagtaggatgactattcc
cagatatgcctcacatagtagcaattgttccaaggctggtcttgagaatgatgaactcaa
tatctgatttcaggtacataaatagctattggagtggctatcaccacactgcaatgtcct
tcccacgaagcagaggaagaggaggaggaggaagaggaggaggaggaagaggaggaggag
gaggaggaaaaggaggagaaggaaattattcaactatcacttgttggttaggtttaaaca
attatgggcatatctatctcttggcttcaggtaggcatcagtgatgaattgagacaatgt
cataatgttttatatctggatagcatttccttatccactagtgagaaatagttgtctaaa
cagcatctcatatgaatttatacttcatatctagggattgtgcttacttacacattaaaa
aacataccagtcatgttatttattttttttttttagtatgctaccctgttttgtgtttac
agccatgcaggtagctaaaatcactcacttctattgttttctgtcaaagccagttgagaa
tctggtcctcaggagtcacttaagcttccgaggcccctctagtcatttatttatttattt
atttatttatttatttatttatttattttcttacagttgttctatagatattaaagacct
tgcttgactttggatttcttagaagaatggagaaaaatttccctctgtattaaaactcct
ctttctagactagactagagctccctgggtgatgtttgcatgcccataccccaagcaaga
gcacaaacaattcttgactattacagaacattttgagagatgcctcccagtcctctgaaa
cccaggtgaatgtggagggcaagcgggaatattctctctttcaggccctctggccacgtt
catatcacaccaagtatagttagggaacacctaggaggtcagttagaccggtctggtact
ttcaattattgtgtaatatttagatcaaaccagagtaaaaatcaaacaataaaataaatg
tttcttagacatacatgtttgtgggagttagagaggtggctactcttctagaagacctgg
gttcaattcccagtacccacagggcagctcacaactgtctgtaatgacatgaaatagata
gatagatagatagatagatagatagatagatagatagatagatagatagatagataaaac
aataggtttttgaagaatgtaaacatacttttttgttccttaagatgatccttgtcattg
ttacttaatgttgaaaaataattcaattgatttaagctgaagtttaacatcagtgtattg
aactttgacctttgcaaatcgtatatgatgtgcccagactactgtaacttaaactttaca
gcttttttttttaattctggaaaaacatgcagcccatcttatggatcagtaattgtaaca
aattagcaatcaagaaatctagttgcactgatcttttccaattggcatagctgatgccat
gagagttgtttgagttggaaggtaatgctctgtaatgtcaccatgaacccaaactgaata
cataataaataaatattacctgtgtaaacacggataaactgtgggactcaggcagttctc
aagtaagtcacacaaaaaacacaagacagtcttatgaaagtacataaagctatctacctg
tgttttttgatctttgaaagcatataagtagcagacatagttaggcctttatatgataag
ataaataatactcacaacttttctattttattttggtttgcttttattcttgtttgccta
ctatggaatcagtatgtaaagaatcatatcattgctttggtagagaaggaagacatagaa
ggccaggctagcatagctcacataactatagccaaaatcagagtttgaagagccctgtaa
gttagacacagggagcacggcaggaaacgttcatgcactgcattctccccagagtctcca
gaacctgacccttattagtcctaaattcaaatgatgatttcacaataattttttactttg
atgatcttaaaagattaaagattccaaacaaatgtgggaagagaacttcaaaagttccct
tcacaactcttttggatcaaaggaattttattttcctggaactaaagaactcaaaggtaa
ataaaaagaggctgaattttatagGGTTCTCCATTAGTGCCTGTTC
Primer
(+)aggacctccacataaaaccaga
(+)GAACAGGCACTAATGGAGAACC


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