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Mouse element [ mm1886 ]


Position: chr13:15,430,073-15,434,096 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTATCATGAGGTGGTGAGACGAaggtatattcttttgatttaggaagaaatgttctataa
atatctgttctaggtccactaggtttataacttctgttagttcactgtgtctctgtttag
tttctgtttccatgatctgctgattgctaagagtgaggtgttgaagtctcccactattat
tgtgtgaggtgcaatgtgtgctttgagctttagtaaagtttcttttatgaatgtggttgc
ccttcatttggagcatagatgatcagaattgagagttcatcttggtagatttttcctttg
accaatatgaagtgtccttccttatcccttttgatattttttggctggaagatgatttta
tttggtattagaatgtctacactagcttaggagcatttgcttggaaaattgttttccaac
cttttactccgaggtagtgtctctctttgtcactgatgtgtgttttctgtatacagcaaa
atgctgggtcctgattatgtatccagtctgttagtctatgtctttttattggggaattga
gtccattaatgttaagaaatattaagaaaaagtgattgatacttcctgttatttttgttg
ttaaaggtggaattatgtttgtgaggctatcttcttttgagtttgttgaaagagtacttc
ttgctctttctagggtacagtttcccttcttgtgttggtatattctatctattatctttt
gtagggctggatttgtggaaatgtattgtctaaatttggttttgtcatggaatatcttgg
tttctctgcctaaagtaattgagagttttgcaaggtatagtagctgggctgtggagtttg
tgcccagcttctactcagggcactggcccagactggaaggaacctgtgttactcatccgg
tggggttcctgtgtgactgggtccctctggtcacccttaaaacgcttcttaatttcttag
ttttctctcatttctcttctatagataaattaataaagtaacatgggctttggaatcacc
cctctccaagctaagttatatttagcttactttaacaaatgttcattgagcttgttgctc
tggatggagtttgtgttgggcaagtaatggaagggtgaatctgaccttggggattttaca
ctctagggaaaagataggtatataaaaagattattccaacctgaacatgttatttaatga
atgttctgtgaatagttttgtaatacaaaggggtatcctagtacacaatgtactccagat
aaactgagttcaatcacttagaaataagtattatttatatacataaatattagaactgga
gagatactggctagatccagaggacctagattcagttcccagcactaacatggcagctca
caactatctgtaactccagttacaagagatacaactcctcaccaggtgtggtggtgcacg
cctttaatcccagcactcgggaggcagaggcaggcagatttctgagttcaaggccagcct
ggtgtacagagtgagttccaggacagccagggctacacagagaaaccctgtcttgaaaaa
ccaaagagagagagagagagagagagagagagagagagagagagagagagatacaactcc
ctcttctggcctccatgggcatcaaatacacatgtaatacatagatgtacacgcaggcaa
aacaccaatacacataaaataaaataatggatttttaaaaaataattatgaaccaacttt
tagggctacatctctgtagtctcggcatatggtaggtataggcaggagaatcaatttgca
gctagcccagggtatcatagtaagacactgtcaagaaattgagtgaagagagagaggaaa
gaaaagagaagggcagaaggaaggaagagacagagagaggttggaagcaggaagcaggaa
aggaaacagttaaaggcgtccgaggaaggggacctgcttacaaagcagcatgagcagagt
ccagacaggcttcagtcagaagaaaagggtacagtcctgccaagcaccgtctggttgaaa
ggttgtactctataagctttcagaaaaaaaaaaaaaaaactgcacgttgtacattgttga
aagcaacataaactgtggcagctcctgggccagagtcctgactgcttgtatcccagctga
ttgattacacatggaaactgtcttccatgggttgccttccccttaacacagtgtctaaag
atactaacatgatggtgaggacctaataagatggggtagctgaagaccatgggttcttat
acatttcttcttacctcactgcattagctaatatcaacatcactaacagctagctgcctt
aaactatgccctcaatgtgccctcactgacccaatggatcccatagtgctatttccgcac
acctagagaatctcttaaatatgcattgcttcctccattttatggaagggaaagttaaga
tttgcatgtgcgacctcggtcccaagagccacaccctcctgtcagtgatgtctgcaaagc
aatggggctgcatagtaatttctctcctctatgcttccatctccaaggaagccactggga
gtctttgtgttgctgctgaagggttttggggaatattttgagtaaagaactaacgtcagc
agtcttggttggtatgtcagactgtttggggtggaacacaaagtttctcttcacagtctc
cctccaggatttgactttattctttgtcattcaaaacggacagtggaggccccagctaca
atactcaattaaccctgggcagactttggcttactgttttcaatgctgagaagatcctag
tggctataaagtatctccaggagatgctgcaaaccaagattctagccactcacattctga
ccaacaacttaaataataatcattcaaatgataactataaggtaagctggttcatcttca
gtgttaagaatatcttcagacctccttcagtgtcaggcactggcccaggataaatgtaac
caagtacaggagctaacagtctgagcccaatcaatttatataaactgccacttcacccca
gcccctagcctgcaatgtcctgcccattgcctctcagaggctctctgcttctggccaatt
gcttgtttagagagagaacagagggagtctcagactaggaaagaagtttttaatcagttc
ccagactcctttgaacttcaacacaagtcccctcaaggtgtgcttcagatttacagtgga
ggttgctgggagaagctgtctgagataatccaaaccagagaagcagtgtacaggactgca
tgtgtatgtcagccaggcccaggaccctgccaggctgacacagccatgaggcacaattgg
ggcctgaaatcctttgcctctttcagtttgtcttagaaattgctactgtgcagagtggag
acagaatgaatgttccagctctgatgtgctttcttaattgtatgtcttaatagttcattg
ctgtacaaaatatcacttagaaccactttcctttatagtgaacattacactagtctacac
acacccatacacacacacacacacacacacacacacacacatacacacacacacatacac
acacacacacatacacacacacacacacatacacacacatacacacacacacatacacac
acacacatacacacacatacacacacacacacacacacacacacacacacacactgaaac
cttgccaaaaaaaagtgtaggttgtgcatgcccatttaaaaattccagaatctaaggttc
tctgaaacctaaaacttcttgagtatgagtatagagatgacgctgcatgttaaaaggaaa
gaaagagagagtaggaaaaaaaagaaagagagagaggaggggtgagggagggagggtaag
agggagggagagagagagagagacagagagacagagagagacagacagagagacagagag
agaagagaaaattatacacttgatcaaacgtattaaaatACAGGTACACAACAGATGTTA
GATG
Primer
(+)GTATCATGAGGTGGTGAGACGA
(+)catctaacatctgttgtgtacctgt


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