Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1885 ]


Position: chr13:15,420,505-15,425,699 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GATCCAACTGTAAGGCATTTCCtcaattagtgatcaagggggaaaggccccttgtgggtg
ggaccatctctgggctggtagtcttgggttctataagagagcaggctgagcaagccaggg
gaagcaagccagtaaagaacatccctccatggcttctgcatcagctcctgctttctgacc
tgcttgagttccagtcctgacttccttggtgataaacagcaacatggaagtgtaagccaa
ataaaccctttcctcccaaactggcttcttggttatgatgtttgtgcaggaatagaaacc
ctgactaagacagagccagagcaaatgaggacaccggagaacacagcccacagaatcaat
taatcagggttcataggggctcacagagactaaagtggcaatcacagagcctgcataagt
ctgttttaggtcctctgcgtacatgctatgggatttaacttgggggttttgtgggactcc
taacagtgtggatgagggtgtctctgactctcttgcctgcttttggggccttttttttct
cctagtgggttgctttatccacctttgatatgaggagaggtgcctaatcttattgcacct
tgctatgctgtgcttgcttgatatcccggggcagggggggggtgctcttttctaaaggga
aatgaagaagcagtggatctgggggagaggggaggtgggaggggctggcaagagaagagg
gaggggaagatgtggtcgagatgtattatataagagaagaataaagaaaaagaaaaatat
ataataggagctacagaaatatataatagtggctcagcttaacgtggttctcaacgggtg
ggtcatgactcttctggcaaacctctagctccgaacgcatttatattatgattcataata
ttagcaaaactacagttatgaggtaacaatgaaataattttatggttaaaaggttgcagc
attagaaacgttaagaacttctggcctcagtagttacagtacttcctgctcttccagagg
accggagtttggttccctgcatccaagtcaggaggctcgtaactacatgtaattctatcc
atggtatctgctgcctccttctggcttttatgggcactgcactcatgtgctgctcatata
ttcagatggagatagcaacaaaaacaaataatttttttaatgtaataaacaaggagaaaa
gaaaactgaatatcctgtgtgtgcttctctctgtctctctctgtctctgtctctctctct
ctttctcacacacacacacatacatacatacacaggctattttcataaaaaaatatccat
tagaggctggagagatggcttctgctaagagcacacactgctctcacagaagacccaggt
tcagttcttagcacccatatcaggtggctcacaattccctgcaaatccagtttcatagga
tctgaccttctcttcttgcctctgtaacaagcatgtggcaaatacataatataattttta
tagaattaaagtgcaatattagggtgaccaagcatgtagcaagattgctgtagtgccatc
tttaactcagcatactaggctaaacaccaagggtgcctgtaaggcccatcccaaaaacag
ctcaaattgttgcagttcactcctgatagtggtgttcttatttggagaactgtcatcttt
gtgccattcccttaggcaccgcatgttataagacctcagtgctttgtatttactgagtga
acaaaatgcctaaagttgtagttgagtaggataatgaattggaagccttcacagacaatg
tatctcatccacattattcttctatcactgtccaggaatcaatgccagaaatatgatttt
tgctctgtcgatattattttgttttcagtctaaggtggtttaactatttaggaagagcac
ttgttttgttgtttctagacaaagaactgctaagcaatattttttttccttataacatgt
tagtttggtttcttggactgtcattttgactaggatttaaaacagacattgtcaagaagt
tagaaaatacccaaattagagagttggcagcatgtcattaacagactcatctggaaactg
tgcctgcccgtcaagactgtttgtaaatctggagataatcatgggtacctgaatattgca
gtcaaagataggattctatagaattggaaaggcatatagtaactaaggtaattgttatgt
ccagagtcctaatgcaagctactcaattccaagcaatggacactagaaattaaagcaatt
tctaagaaatcagcaaatgtattttcctgggctgggacagaaaagagaattcaaatccag
acacaatatatagcctctattgttccatttcagaaacataaagtcttctatgtcattacg
tgtcctcagagattgatcccaattgagaagccagcactaggaacataactaatatttact
gctggcttggtgaagacactgagtaaaggcaatcctaaacaaagagactctgaccatatt
gtgtcgatttcagggatctgagaggcaactgaattcgtcatgaccttaggacagatgttt
ccactcagtttttcagagccatagatggtaatcaacttacagcaaatctttatctcagac
acagccacctggcttccttgagcaaaacagcagcattttagcagatttctgggcagaaaa
gctttgagaaatacaaagaaatgggatgctttgtaaatgccagtcatggtgggtgctcag
aaagagatctgatttggatcagaaagattgcaagatacattctgtaatcaaggaccttag
gccaaatgggatttgtgtatcaggctacccttagaagataaatttcagactcaccagact
ttaatgtataaaaaccacctgtgtagtgctggagagatggctcagcagttaagagtgcta
cttgtcctttcagaagacctgggtttttttcctggaacccacatggtagctcacaaccat
ctataactccactaccagggaatccagtacgacttcaggcactgcctgaatgaagtacac
atacatacactcaggcatactcataacattaaatgcatttttctttttaaaaactaacct
gcagctttgttaaaatgcagattctgattcagtggtgggtcctaagcatgcatttctatg
tgtcctcagtaatgttgatgtgccaagtccaaagtcagactaaggagatcctaagttgcc
acagccctggtctggattgtcactgctccagagaccacaagacttacttggccctcctca
ggtcacctgggggacattgactcatctactgaaatcaaactaaatttacatcttccctcc
ccctctctttctgatgagactctagagaagctcacatgttgatttgggatagtttgctat
tgtgattaagtgaaagagattcaacaagatttcgatggggaataaaagaattctctttct
gaggaaatgtttaattcttgctcttccagttgatttgtaggggtgagggtttaaagttta
gatctaaaatgctactcactattcttttcctagtttaatagttagctgcatttgagcaga
aactgggcacaactagctgtcaaatccagatctctgatctccctgtgacagtgtgtgatt
ctgggctctgcttaaagtgttcctttgattaagacccactgaacccaggcctgaattgct
catagcagccttggtaaaacaactgagtaatctaccaactgacgtgaccagtggagaaaa
ccaactcaggagggaatggggcccaaactccatggctacaacagtgacatacagttttag
cccatttcttaaagtttagaaccacatctgggcatcagtacctttccctcctgcactgac
aaaccacactccattgtttcctctactgtaaactttgttaacaaccaagaattgataaat
atttatctagaacttttctccatgttatcataaagagaaaatttattaaaaaaaaaaaaa
aaccttgctggggcttatgaacgggctataggactcattcgaagcaagctaggagaacaa
ccagtagctgatttctccatatcagcatgactaatgcttaaaccagattatttgcacttt
ccatggtatatttaataaccgttttttaaaaagagctaaagaacttgctaaccttcgtaa
agaatatcattttcagctaacagcagtcatagtaagaagattcttctgccacctgactat
ttctttgtgtcaagaattcgcaaaggaaaaaggaaaagaaaggtcacagctcaattgcca
tgaacccacgtgcagtgtcacacctgctcatgcacatcttcggcagcatgtcccctgtgg
gctcaaaacaaaatgacaagaccattactgagtatcccagacaagccctgggggaccggg
ggaggatgccagcatgctcctggtactaatagttcccaggcattctttttcaatcaatat
aaataaaatgtgttttcaaaattctatttatttatacttaaaatctaaacttaaacactc
agaaaataaatagaggttcaagtggtcaatggttatctgtatataagtctgaaattatta
atgtccagttatattaacattaattttaaacacatctgcaatagtccaagtgctcaataa
ctatgaatgactagtaggtttcatatatcagacagcagaactctagagcatttcatcagc
acaggacattcaaaggaactgtagccagcatggacatataccagactaattgtgacaact
agctctagaaattgagatcagaatgaggcaaaagagtattagtatttttagttttagttt
tgttcggtttttttccacagtattatatacttgtcttaaatatgaaaatcatgaaaagct
tgaaatgttggatggagatatcacttattattaaacatgtttgatgacaactttaaacta
tgtaattactttctatggatctaggaacaaaacctttaagtagatataaaaatgtgtttg
tacaagtattattccataaacataccaaaatgcttcatttttattggatattttctttgt
ttacatttcaaatgttatccctttctcaatttccccctttcccagaaacctcctatccca
cccccctccccctGCTTCTATGAGGGTGTTCATCC
Primer
(+)gatccaactgtaaggcatttcc
(+)GGATGAACACCCTCATAGAAGC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.