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Human element [ hs1885 ]


Position: chr2:26,942,649-26,946,100 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: KCNK3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
agaaGTGTTTCACCAGCCCTTGTTactccttggcctatcagaacagacttcaagatgctc
ccttctgcagcatagggcagtaaaagatgacatgagggccctggattccagtcctagctg
tgtcactgagttgctgtgaccttgggctagtccctgctcctctctcagcctcagtttacc
catctataaaatgagtggggggaagggcaccgtggctcatgcctgtaatcccagcacttt
gggaggccgaggcaggtggatcacttgagatcaggagtttgagaccagcctggccaatgt
ggtgcaaccccgtctctactaaaaattagccggatgtggtggttcacacctgtagtcaca
gctactcgggaggctgaggcagaagaatcacttgaacccaggaggtggaggttgcagtga
gctgaggtcatgccactgcactctagcctgggcaacacagcgagattccgtctcaaagaa
acaaaacaaaacaaaacaaaaaacgagtgggttgaactacgttgtcacaccaggactgat
cgctcctaaggtccctatccccaggcacccagagcagccctggggtgcctctgagggcct
ctgcacaaagccggcctctgggatgggccagaaggagctggccagggaggcaggcctggc
tctaggccaggctgtgtctgcaaacactgaccttggctgccgcagggattttccatgaca
ccagcaccctccctctgagctccctgcatcacacatgggcctgaggagggtgggggatgg
gggctttgggggtttgtcctacatcagaggccccaagatcagtactagggccacctgtgg
atgggaggcagctcaaggcaagagaggagacagcagtgggcccaagagtggggagtccag
gaggaagcatggggcagggagagaagctgctgggggtagtggggggaagagctgggagag
gagatgggacaatgggaagagaggcctcgggaaggggcagggcagaagaagcggataggt
gctgtgcttcagagctgtccttcccaggagctctggcctgaagagggacaaactccagat
cccattctgtacattggtcccacccctaccccagctccatgagacccggtggttcccagg
cctagctaggggcttgcccaggcccagtgcaggggggattccttctgaaccttgaagctg
acctcattttgaaggggccagaggccacagtgaaggcaggagctatgagtcacccgaggc
cctcctgccaagggccacctcccgtccccatcctggatgtctaaggggtggtttctcatc
accatcccagacctcagagtccttcagaactggagcctctgggttctgcagccctcccac
cccaggcctgtgctggacactgaggggacaagccagccctgcaggactcctctgtggaca
tgagtgcccaaatacagggtgggggcctgagaggggcagagggaggagaggcctcttcag
tgcccagagaaggttcccagaaggttctcgggaaaggcagtgtctgagctgcatctcaca
ggaggagggagagcacctgcgccctcctcccgtctccaccaagctgcagcccctccctcc
tctcctcccccaagacctgggcacagaagctaggctccttccgcctcatctcctttaaca
tgccaattaggctccctcagagcctgcagtcccacttcctggttccacactgctgccatc
cccacaactgaggggcggctccatgtctgtgcctcaggcgcctgagctggttcctcgtgg
gccctcccctgggtgccctctgagcccagctgccctctgccatccagcaggggagcccag
ccttcctctgagggccctccctgtgtcttgcagcccccagagctgcctctgtctccccca
agcccgcactcctctctggctgccacaccaggcccaagccacactgaggtcacttcggca
tcagcccagagttcacggcctttgggcacctcaggccacaggtccctcatccaccttccc
tcaggacaaacattagcccagccattgcctatttacattagataactaggtcagcctgga
gacaggcacagctggcattgccaagggctgtggtttctaatctacagaagggctgggcca
cccagagaaggagatcaaagaatcatatcgtcagagacctgggggaaggacctcagaggt
tcttgatactgcacaggagcgtttcccaaactgtgctcccagaaacacttgctcggtaat
gtgcactatgagaaaagtgctccacggtcaaggaagtgggaagacaggcaccttttcctg
gccttgatcgaccttgcacatgaacacatacatagccctgagaaagcctaggctcaaatc
aaatgatggtgaatcctgttaaattcagcatttccccaatttaattgagccaagcaactc
ttttctcatccaacagttgttaacattccatggaactggtatttcagaaaaataacttga
gtaaacactgatcatagaatgttggcactgaaaggaactttaaagatcatcaaatcttgg
tgctccccaaaatattcatattaataattcatatttattgatctcaatgtcctaagcatg
ttaagtctatgaactcaatcaagtccccacaccaagtctatgaagtgagtacttcattat
tcccattttacagacgagaaaactgaggcacagtggattaagcagtgtggccaaagataa
agttgtttggcttcagagcctgtgatcttctctactccactaaactgcagagatcctctc
cctgtgttcagtatttcaaacatacaacaataacttaactccatctcaaagagtcaatta
tctcaggctaatcagactttctgactggcagatgtgtgcttaattaattttgatggggaa
agaaattaattatggttctaacaatgatttattcagtgcctgctctaaagagtatccaca
ctgcactgatcaccacatcgaacttcataaataaaatcttccaaaattttgcctctgtga
atgggtgagtgaacagagaaaataataaaaggcagtgggaaaagctgggaacctcatctc
ttgccctatcttccatgtcacagatgaggaaacctgaggcccagaaggaacttgccaaga
cacaaagctgtctttgatcagggtcaggtcagaccccagatctcctgcctcctagcccca
tgctctttcctctgcccaaggctgtggccagcatcctggccttgtggccagctaggccaa
gggtaggaggtcaagcaagcagactagcaggcataggaggccagtgggaaacaagcagcc
aagcccagtccagccaaggccatgaccaagggctcagagtggctagttgtgctttgaata
gaaggaaataagCCACAGGGAGAGAAAGACCA
Primer
(+)caccGTGTTTCACCAGCCCTTGTT
(+)TGGTCTTTCTCTCCCTGTGG


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