Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1884 ]


Position: chr13:15,415,962-15,421,022 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGTGGTTGAGGTCTCACTATGtaccctttgttgtttacaaactctttatgccaatattg
aacatagatggacacacaattacatatagaacaattgctctgataaacaaagacacaaat
ttttcaataaaatgcctcagactaaagaccacatcaaaaggatcaggcaccacaattaag
ttggttttatttcacagatacagggtataggattcttcactctgatttctcatacatgaa
ccatgtcgtagttagggatttactgctgtgaacagacaccatgaccaaggcaactcttat
aaaaaacaacatttaattggggctggcttacaggttcagaggttcagtccattatcatca
aggtgggagcatggcagcatccaggcaggcatggcgcaggaggagctgagagttctatgt
cttcatccaaaggctgctagtggaagactgacttccagacaactagggtgaggatcttat
acccacacccacagtgacacacccattccaaccaggtcacacctattccaacaaggccac
accttcagatggtgccactccctggtccaaggatatacaagccatcacaaaccatgaaga
tctaggagacatcacactgaaatactatttgaaaagactactaaatggtttctttacaaa
ggtcactttaagtagatgtgtattcagggagtatgatacccctggaattaactacactgc
acagtttttataattgttagatctaatatgtaaggagaggaatatatgagtaatacaaga
gcagtcatggagttaagagattgtccctcacaatctttggtgaagaaacaaccaaccaca
gcaaaaataaaactctcaatatcactgttctctgagtccagaaactgaagtacaggagaa
agcccatggaccattatatcaagttcagcttctcagagaaggagagagcagtcagatatg
caacagatgtagagagaacaaagaaacagcacagcagttctcaaagcatatgaacaaagt
acaagaattaaattctcaatatctggggtatttttaaaatggtacccttcaaaacaaaaa
acaaacaaaaaaaaatggtacccttctaaaccatttcttagaaacgtctgttttcctctt
gaaaacaacatctgtgcatctagtccagcctggccttgaactcataatcctcctgcctca
gccttctaagtgctgggattagaggtattcatctccaagcccagagattttgtccaatcc
tttctttcctggtccacgggctctcaaacggttgcttggctgagatataggccttgggtg
agatgcattattatttcaagatgctctaaagttctcgttcaagtgtggcagtactcccag
gcaatgccccattccatcctgacctgcagctcttgccatgtaaaataaaaaacagctcta
agcctccagtatttgtcttgtagcacagtatgtctgtacattgttaagcagctgccacac
tttcccccagagattgctccatttcagggctggatgaggtaatggggatatttaatccaa
gttaagcttgtaaacgtgctttgggaatctttggaatgaaaagaactgtgcatacccaaa
aagtttgtaactaattacataatgtatacccagaattcgggaaaaaattctatttgggca
cctcccacctgatttaaaaagtgattcctttgcatggacaagataaatctaaaatgaaaa
tgtaaaattgaaatgtatcaaaatgccaactcaaaatggcaagtactgatacaaaacttt
tagattataaccatacctataagatgggacttttggctattacataagcacatttgggag
aagaaagggggtttaaaaagaaaagaaaacaaaaaagacaaaaaggaaatgactagggag
aaggaaacagttgtaatgtgtttgagtcagttgatgagttatttggaagtgtcagatggt
ttcttgggatagtggtttaagtgtcacaagagtccatgtagtaaaaggcctgtcatagag
ccatctctacaaaataaatgcaacttcatcctccctccaggttgtatcttggactatagc
caagcatgactcaattaattgagggaactgaggggtttgaagacaggagaactgaggaaa
ggccagggccataaagccaatcttttcatttgttggcattagacaggtggtaggcagatt
gacacagctgctgatgcttggaaaatgtccagctcacaggcaaggtttggcatccgagcg
agaggccagacatcaggccaagaggtgatttcagatacaactgtaggaccatgaaaggca
gcctgatttctggtcgagcacagacttggaaccccagtgaccctgcagggacagtaggca
ttttgccacactcctagacactaagctcctgacatgaggtcgcagcccaccacagatttg
tggtcatcagtcacgtgagggcaacaccctaagctcctccataggtagaagacatgacca
catctcatgtaacctcaagacagatctccatttaaatgaggtatctaaatgcctggagcc
ttagtcaataaactttccttcccagacactcctccctgcaaaaggtatttaacctcaggc
atgccctgagaaagtggggttttgtttaactcatccactttccaccatgacaaaaaatgc
cttaaaaccatggactgcctctttcattgggattcaccatgaggagcaatggaacaggcc
tttgcctaaatagccagccatctaatctcccacagaagggctgtcagcactcccagccac
tgcctccaccaagtcaatcgacctgctgaacaagccctaaggactctctcctccccaggg
acccagcctgaactcttcctgcctttccccctccaccccagttacatccagcccgagggc
cccactccattctcagctcttctgtggcatccagcagcacctgggtgcccaagagcttga
gaatcagacggctccagcctccctgcaggcctggacccgaaagccagctctgctgtccct
ggggacctcagactgcaatcccccatcccggagtggtgtcccatggcttcccatagccca
acacctgcctgtcaagtggggtgagctcaatcaaaacttcctatgtcctgcctctccaag
tggcctgagctctatggcggagtagatgagggacacccataaccctacatactattagaa
acatggcaatgacagtcatggctaactgagcaattaagatctaagatgggtcctccagca
aggaccatagctactaacatggtactcaaaatccaatctttaaatctgtacaagggaggc
tatctgcaaggcataggctggagtatgaaccaggaaaactgtggagaaagacagctgagg
tcagggaagctaaccagtagcaattccaaaatttccacataaaaatttatttggaaaagc
attctgcacatagagaaatatttcaaattgtttgcaaagaggtatgcataaggctcataa
gataatgtttcttacttttaaaaaatataataggagatggagaaatgtgtataaattgta
tttacacaatgaagtattattactcagctgttagaaaaaaaaatgacaccatgaaattta
caggcaaatgagtggaactaggaaaaaaatcatcctgagcaaggcagcaagacaaacttg
ataggtactcattttaagtgcatatgagttgtaaagaataatcagactacaatcctccac
agatcccgagagcctaaataacaaagagagctctagaggggacaaacagatatctatggg
aaggggaaacagaatagcttttgcttccccatgggctggggtgggaatgggaacagaaga
gatgaggttggggagggaggggtaaaaggaagaggaagagtacagataaagacatgtgaa
ataggtgggcccgaagagggtgttctggagacctagtgcagtggaaacttcctggaacct
atgagggtgaccctagcaaggacttctaataatggacaatttgtacctgacctggccatc
ttctttaaccagacaaagcttctagtggtaagactgggacaccaacccagccacaaaatc
tttaatcctataatctgttctgcctgcaagatacactggaacaatagtatctcagagctg
tgggagtgatcaaccaatgactggcctaacttgagctctaactcacaaggggaagcccat
gcctgaccctgcctgtgtgcctaagaaccagaagttggatggctcagagacctagggtag
aaccaaacatgactggaaaaagaaaaatcagagaggcttcctctaggagttaatgggaac
aaatgcagagacccacagccaaacagtaggcagaggttgaagaaccccatagaagagcag
aaggaaggattgtaggagcctgtactggctagttttgtgtcaacttgacacagctggagt
tatcacagagaaaggagcttcagttgagaagatgtctccatgagatccaactgtaaggca
tttcctcaattagtgatcaagggggaaaggccccttgtgggtgggaccatctctgggctg
gtagtcttgggttctataagagagcaggctgagcaagccaggggaagcaagccagtaaag
aacatccctccatggcttctgcatcagctcctgctttctgacctgcttgagttccagtcc
tgacttccttggtgataaacagcaacatggaagtgtaagccaaataaaccctttcctccc
aaactggcttcttggttatgatgtttgtgcaggaatagaaaccctgactaagacagagcc
agagcaaatgaggacaccggagaacacagcccacagaatcaattaatcagggttcatagg
ggctcacagagactaaagtggcaatcacagagcctgcataagtctgttttaggtcctctg
cgtacatgctatgggatttaacttgggggttttgtgggactcctaacagtgtggatgagG
GTGTCTCTGACTCTCTTGCCT
Primer
(+)TGGTGGTTGAGGTCTCACTATG
(+)aggcaagagagtcagagacacc


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.