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Mouse element [ mm1883 ]


Position: chr13:15,411,247-15,416,437 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ATTGGTACAGAGACAGGCAGGTagatcattggaatagaactgaagacccagaatgaaccc
acacacgtatggtcacttgatctttgacatagaagctaaaaccatccagttgaaaaggac
agcattttttttcttaacaaaatgctgtagcatgtagaaaaatgcaaatccatccattct
tatctccctgtacaaaactcaagtctaattggatctaggacctccacataaaaccagata
cactgaatccaatagaagagaaagtggggaaaagcctctaacacatgggcacagtgaaaa
ttttcctgaacagaataccaatggcttatgctctaagaacagacaaatgggacctcataa
aattacaaagcttctataaggcaaaggacactgtcaataggacaaaagggcaattaagag
attgggaaaagatctttaccaatttacattcaataggggactaatattcaatatatacaa
agtctaactctgaagttagactccagagaaccaaataaccctatttttaaaatgtgtaac
agaggtaaacagagaattctcaactgaggaatattgaatgtccaggaagcacctaaagca
atgttcaacatctttagtcatcagggaaatgcaaatcaaaatgaccctgagatttcatct
acatcagtcaaaatggctaagatcaaaaactcaggtgatggtgagtatgtggaaaaagag
gaacactcctccattgctggtgggatttcaagctggtacaaccactctggaaatctgtct
ggcagttcctcagaaaatcggacatagtattacctgagaacccagctataccactcctgg
gcatatacgcaaaagatgctccaatatataataatgatatatgttccactatgttcatag
cagccttatttacaatacccagaaactggaaagaacccagatgtccttcaacagaggaat
ggatacataaaatgtggtacatttacacagtggagtactactcaaccattaaaaataatt
acttcatgaaattcacagacaaatggatagaactagaaaatatcaatcctgagtgaggaa
cccagttacaaaagaatacacatggtatgcactcactgataagtggatataagtccaaaa
ggtcggaatacccaagatacaattcagagatcacatgaatctcaagaagaaggaagacca
aagtatggatgcttcagtgtttcttagaaggggaaacaaaatattgacaggacgaaatac
ggagaaaaagtgaggagtagtgactgcaggaaaggctatccagagactgcactacctgga
gatccatcccatatacagtcaccaaacccagacattattgtggatgccaagaagtccttg
ctaacagtagcctgatatggttgtttcctgagtgactctgccagagtctgacaaatgcaa
aggcagatgcttgaagccaaccattggactgagcacagggtcctcaatggaggagttata
gaaaggactgaaggagctgaaggggtttgcaaccccataggaagaacaacaatatcaacc
aaccagattccccagagctcccaaagagtacacatggagggacccatgactctagccaca
tatgtagcagaggatggccttgtcaggcatcagtgggactttgaaggctcaatgccccag
tggagaggaattccagggcagggaggtgggagtgtgtgggtgggtgagcaccgtcataga
agcagggtgaagggaggtgggagcaaaaaaccaagaaagtggataacaattgaaaagtta
ataaataaaatatccaattttttaaaagagggggaaaaggagaagaggaggacaaagggg
gctgtgagaaggagagataggaaggaggggggattgatattggaatgtaaagtgaataaa
taaattaattaataaaaaaagaaatccttctcagttttaaagataggtgtcacttcaaag
tgaaagagtagacaaaagtattccaagcaattgggataaggaacaaagcaggcatggacg
tgctaatacctgacaatattaacttgaaactaaagcaaaccagaagagagaagaaggatg
cagtattttaatcaagtgatcaataatctaagaaaatactacaatttgaagatgtataca
ccaaactcaagtgtacccaatttcataacaaacatacaaatcaaattaaatacacagatt
cacataaatacagtattagatgatttcaacaccccactttctccaatagataggttgtct
gaacactaagcagtgaaaccacggaagtaaatgacatcttacatcaaatggacctaacag
ataactacaaaatattccatcgcagaatacacattctactcagcagcacatggaaatgtc
tctaaagtagaccacatccttggccgcaaaataaatctttacaaattcagagcaaatgaa
atgcctctgtgtatcctttttaagtatagtagcaagaccctaataaatgtataaattgtt
ggagattaaacaacatgctactgaatgatagatgggttaccaaagtaaccaaaatggtgc
taaaactaaatgaaaataaaaacacagcaaaactttggagatacaataagaacagttgaa
gggaaaagtttctgtccccaggggcctatagttataaaaaaataaagaacacatacacac
acacaaaaagacttaatgataaaacccaagaactttgaaaaacaagaacaaaccaaaccc
aaaggcagttgatgaaaaacaaaaagcaaaaattaatgaaataagaacaaagaaaacaat
acaaagaattaatgaatttaaaaatcttgttctttaaaaatattaatgagattggtaaac
ccttgtcccaactaacaaaaaggaatagaggaccaaaattgccagaatcagaaatgaaca
gaaaaccattacaacagatatcaaagttgaaatattcattgtaaaagaacacttaaaaac
tttactaagttagatagatagatagatagatagatagatagatagatagatagatagata
gatagataaatccagattcagccataccaccaaaattaaaccaagaagagatccacaacc
taacagacccataacaattgggaaatgcatagtcacaaaaggccttccaactaaaaatgt
cccagggacagaaggattaacagcagaatcctatgacactttcagtgatctacaacgaac
attttttatattattcaaaaagtagaaacagaaggagcaattatataattggaaacaaga
tccaattataaagcttgtatcactctaatatcaaaaccagataaagaaaaagaaaaaaga
aaaggacatgccaatactacatgccaatattcctagtgagcacacattcaaaaatgttta
ataaaatccttacaaactgaatagacacacatcaaaaagatcgttgaccgtgaccaattt
gagtttatcccaaagatgtagggatggttcaacatacactactcaataaatacagtgcat
tacataagtgagctgaaagataaaaatcacaaggtcatcccaatagattaagaaaaatct
tttgataaaatccaacatgacttcatgaaaaaaaagtcctggagaaagttgaaatgaaga
gaaaatccttcaacataataacagctacatacgagaaattcacagtcaacaacatcctaa
ataaacaaaaacttgaaggcatcccattcacaccaagaatgagacagggcatgttctcct
tttcagtattgtgcttgaagcactagctgtagcaacaaggcaaaaataaggaaattaaat
acatacactaagaagtcaaactaaccttacttacagattacataaaaattaacaggagat
cacaactatgcttaccagaaaatatctagaagtgataaaaatcatcttcagcagtgtggc
aggatacagaatcaacctgaaaaaaatccatagtttttctagatgccaataaaagacaga
gaaagaaatcataaacatactttcattcatactttaaaaaatatctagggataaatgtag
ctaaagtgggaagaacttgacaatgaaaattttaagtctgaagaaaaacaaagacatctc
attttcttgaatttgtactcatgaatttattgctatggtagagccatagtaataaaacaa
aatagtactggaataaaaacagatatgtagaccaaaggaaaaaactcaaagacccaaaaa
aaaaatacatgtaactacagccatttaatattcaacagaactactaaatattggaaaaaa
tagcgtactttcaacaaatgtggggggaggggcactggtagcttgaatgagaaataaccc
cacagtctcagacatttgaacactcagttgccaattggtggtgctgtttgggaaggttta
ggaagtaagaccttgctggaagaggtatgccactgtggaaggctttgaagttcaaaagcc
aggattcagtcttagtatgtactctgctttcctgcttgtggtttgtggttgagatgtgaa
ctctcaagtccctgctctgctgttgtgtggcttgatctctagcttccagaccatgatgga
tttttaatcctcttgaatcataagcctaacaacattctttcttataaaagttgcctttgt
cttgatgctttatcaaaaaggcaaggtgaaaatggtggtggttgaggtctcactatgtac
cctttgttgtttacaaactctttatgccaatattgaacatagatggacacacaattacat
atagaacaattgctctgataaacaaagacacaaatttttcaataaaatgcctcagactaa
agaccacatcaaaaggatcaggcaccacaattaagttggttttatttcacagatacaggg
tataggattcttcactctgatttctcatacatgaaccatgtcgtagttagggatttactg
ctgtgaacagacaccatgaccaaggcaactcttataaaaaacaacatttaattggggctg
gcttacaggttcagaggttcagtccattatcatcaaggtgggagcatggcagcatccagg
caggcatggcgcaggaggagctgagagttctatgtcttcatccaaaggctgctagtggaa
gactgacttCCAGACAACTAGGGTGAGGATC
Primer
(+)attggtacagagacaggcaggt
(+)GATCCTCACCCTAGTTGTCTGG


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