Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1881 ]


Position: chr13:15,398,508-15,403,010 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGAGATATCAGTATCCCAAATTTCAAattgtacccagagctgtagtaatgaagagaacat
ggcgttaagaaggggggacatgttggtcaaatgaattgaatttccaaatataactctgta
tctatgaacacccaattattttacaaagaagccacagtacactggaaaaaaaacagcagc
ttcaataagtagtactggtcaaataaagtagccatatgtataaaaatgagcacagatcta
taatcctgcatacgactcaatccaagcatatcaagaatatcaacataagattggatactt
ggaatctgatagaagaaaagatagaaaataagcttgaattaattggaaagaattttatga
acagaactccaaaagcacaagcaataagaccaataattgataaccaggagctaatgaagc
tgaaaagctattgtaaagaaaagaacaccaccatattaccaaagtggctgcctacaaaat
ggaaaaacaaaatcattaccaattataaatttgacagcagattaggaccaagaatacaaa
aaaaatttaaagctgagcataagtaaaccatgttaaatattatctcttgtcatccataat
gttaatgacttgcattttctctccgtctctctctgtaccatttattgcatagatcaagca
gtaatttacaacatttttcaaagacacactaatgaaaaacttgattttattatatacata
ctttttatttcacttatttccatacttattcataattatttttcaaaattattcccttcc
ttctgccttcttctgattctctttttcctcctttatctagtttcctgaattaaatactta
ggccagaatttttatatagtgcaagccgactgcatgtatgaactcacagtggtgtgacag
cataatataagacctgtaatacttaagctagaccaaaccctagcatgaagagggtaggtg
gatataaatctgtaaccctggagttactggcattcgatagctactgggaaagtcactttt
ccctaagaatcacctttgatatgttaaccattctccactgaaagtccagacatccaatag
tatatggacagcacaatttggacttgataggcaagaagaagaggaagatggaggaggaga
agaaggaggagaaggaagaggaggaggaggaggaggaggaggagagagagagagagagag
agagagagagagagagagagagagagatttcagagtatagggaaggaagtagtgcatctg
ggagaagttgggaaagggaggatgaatatcatcaaaacacattaagattctcaatgaaca
aaaaattatatagaaaaatagtttttccaaaaaactaatgatccagcttcaaaccctgag
acccacagaaactcccaaaagttgtcctctgaactacatgcacatctcccaacataaaag
taaatgtagtttaaagattaattaattaagccgggtagtggtggcacacgcctttaatcc
cagcacttgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaga
gtgagttccaggacagccaggactgcacagagaagccctgtcttgaaaaataaaaaaata
aaaaaaaaagattaattaaatagttaattcctgatcttctcaatttcaaggatcatagcc
cgaagctgattactgttcaatatctaatgacagatgctttgctttatgatctataaaact
gttgataccaagtctaaaaacaggtatctgttccacatgcaatgatggaagcataataaa
gaaaactatttcatatttatatttttattatctaaaagttcatgattatcattgaaaaca
tgaggctcatacagtgagtgtgaatgagagtgaaggatggaagggtgtggatagataact
gagcaaagcaaaaaggggcttgtgacacatcatggaaccattccataaactttaccttgg
gcacctgttgtccaacaacacacaaacagtctctgctgaacacagaaagatgatcatatg
agatggagtggcaatgatggactggaagggtgttgtcctggcagggattttgtcaacttg
acacaagctagaaaaatctcaattggtaaaacccctccatcattttgcatttaggcaagt
ctatagggaattttcttgattaataatagatatagtaaggtacagatcactgtagattgt
atcacccttgcataggtggtcttagcttgtataaaaaagcaaactgaacaagctatgggg
agcaagtcaaaaagcagcccccctccatggtctctgcttcagttcctgctataaggttcc
tgccttggtttttctcaaaagactgtaacctgagataggtaagccaaataaaccctttcc
tcctcaggttgcttttggtcatggtgttttaccaaaacaacagaaaactaaataagacag
gcgcttaaatgcctgcatcaaaagctagtaagacaggcgcttaaatgcctgcatcaaaag
ctagtagctaagaattagcagtgaatgtttaccaatgatttgtttgaatctttttctgag
tctttaattagtatggaaagaaaggtggaacagacagcatgctggttgaatccatactca
gcatcttagcggttaaaaatattggagtgcataccctaaattactgctcacgagtgcaca
aaagggaagctagaaattccttctcattgctgagccctctgttttgtaaaaagccaagga
aaccctacagaacaagccccactgcttttctctcactctgatgtcatctggcatgtagtt
attctcaatgactgtcttggtttgtaagttttagttttatattttcaatattttctgtgt
ctttatagatgttttaaggagaaatcaaaagataatacactgaggagttccaatcagttg
ctctatttaaattgtctgactggaatcattgtgttaatttcaaaggctgctcatttttga
aattttccctaactctaatatttaatatttccgtttacagatttacatgatagctttgtc
ttaaaaatttctctgaaatttaaaatatattgaaatatacttttttttaaaggagatagg
atttatatgagcaatgaatgtaaaatatataagagcggcagatgaagaaagggctcagtg
gtaaaatgcttgtcaccaaacatgatgcctgaagttcagatcccatcaccctacaaatgc
caaatagggatgatgtaacctactgtaatcatagacagtgaatcccagggacaaactgac
tagctagacaatctggaactttattttgaatgaatgagaacatgggactaagtaaatacc
ttgcagatagatagatagatagatagatagatagatagatagatagatagatagatagat
agatagatagatagagatagagagatatatggagagagatgcttgtgtgtatatttgtgt
gtgtatatacatgaatgatacatacatatatacataatatcttagaaagtctcccaaaag
ttattcaccagatagatagatagacagacagatagatagatagatagatagatagataga
tagatagatagtatgaatgcagatcaaagagttcacatggaaaatacacaatattagcca
taggagtataatataggcaaatgaatagggaaattaaaattatatttgagttttaaatat
atcaatataacttaaatatttttaaaccaaagataatacaaagaaaaatagcaataacag
aaactagatcatatttaccagatagctagctaaatataagtgcctatagtttcaaacgaa
acacaaaagctcttagattacattatatataaacaaaaaaactcttgtgtttatactatt
cacagaatattctttaaaatgctatggaagaaagctatacacatataaaacaagtataaa
tagggatacagtattatgaagctgaaataataaatgaagactgcataattactgcagcag
acagtaatgagacagagaggtcactctgcattgttaaatatatagttcatagtaaagaat
cacaatttataaagtcttgtttaacaaataaccaatcagaatatttaaagtaaaaagaaa
atataacaaaacaaaagtcttctaactttttcaatgaaacattatttttaaagattataa
acattttagtaaagtatgtcataagtaacaattatttaaaacattaatcctaatttttag
ctttataaataccatgttttgtggtttttagaaattatcttatttttaagctgctaaatc
aatctcaaatataaaaatatattctttgcctttgttaaataaactagaatttttacaacg
gtcttctaaataactcatgagtcaaagaagaaataaaagctacacatgcaaaaagtttgt
agacattaaaaaccaagctgattgtggcgtcacatgcctgtgATTCTACCTGGCATTTGG
GAG
Primer
(+)TGAGATATCAGTATCCCAAATTTCAA
(+)CTCCCAAATGCCAGGTAGAAT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.