Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs1880 ]


Position: chr7:19,146,921-19,150,251 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: HDAC9 - TWIST1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAgCGCTTCTAAACCCAATACGCttttctggagtcctcggaacagctggccggggctttt
agcacacgggacgggaccttcgcctttgcctgtttttttttcgaccaggagaagcaggtg
cgagagtctggggcttaggaggtggaaggcggggaaagagaatccactaggtcctcgtgt
agagaacaacagtcgctccttagatattactccaggacggaaacctgattgcaaaccgct
gttccttcgaaacttgcaaaacccggaacagaaaactcccgcccagccaattttagctct
cgctgaactctcccgcctgcgttacgtttgcacagcaactctttgtaaatgtccgagtcc
tctcggaggaaagatcgttagggcgacgagaacattaagaggggacctggagggcagata
tcctcgatcccaagagagcaactttgtcgcctcagaaaacacgccaacttccctcctgct
ctttccttggtcaactcagaatcaaccgattgtattgaaatctcctgaaatcccgaacag
ggattggcccagtcggcttctgaaaccgaggccggggaatggcaggaatggggggcagag
aggatcggaaagaagagtccttcccccacagacattcccagctgggacacgagctcgctc
gcagcgcgtttatggaaagagggggcgctgggaaccgcgctggcggcgagcagactccag
ggtcgagattattcgacacgtgtcttttattcctcacaatccatttcttacgggtgattt
atgaacgaatctctttgatcagggacggttttatctgtccactgctacagatgacagatg
cggctgctaaaatgcctggtccccgctgcctaaaaggttgctcccccccttcccaaatgc
tgttgctttttctctggcggtccccaccccctgcttcttcgttctccttccctaccccca
accccgtttgctgtcttagttgcaatccctctgggtggttaagtcaacaaaaaagcgcag
agcagggtcagtaggaagccaaggcaggcatactttgggcacgccatcctcctgatgcca
catttgttagggtcttaagaaggcccctagccggagaccagaagagcttgctcttaaggt
gggggttgcctgccttcggaaactagaagatgaggtcctcacagccaagtcccatgggcc
tggctctgcccagaaaaggctcgtgctggggtagggagccagtacaccgggggaagcctc
agcctgcggttctgtgcgggccggggctcatcagaacaaccactttggcttaattgggga
gggaaggaggcagctggaaagggggagaggggagaggatcacgttacagagcctcctagt
ccctaataggtaaaggaaagcggagtctctgaagcggttattaatagtaggggtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagtagtatttcattaaaaccatatc
ctggaacaaagagttgttctttcatgtttctttgctttgttgttactctgacaggagttc
taaaaacaggatttttccaatcaaaggatccctggagttatctgccccctcctagcctcc
tttccctccaccaaactgctcttggtatcattatcccgctatggattctttcttatactc
ttgatttagccagaggacatttaatagctgattggattaaatgttgcagactccagcctg
ggctatttgaaaatccgggtcgtggactgtgcctaacatcagagaaggaaaactgatcta
tgagatgtgttttaagtttcacgtagtacggcggggagagaaggaagaggaagaagggag
tctctaggttacaaagttagaagtttcaaaaggtgtgcgttgatgaagggtagggagaga
agtcagtggcggaatgaggcaaaaggcaaccttagcaagaagctaatagaaatttcctcc
atcataatgtgcaaacgagatttataagaacactttgtaaatattgctctggatgtcagg
attcttccccaggaatggagtgctgactccattaggggtgcatccacagacctctctgaa
ggacttgtttgtcattgctaaatttgtggtaggaagatggtttctgcttcaagtttgctt
tcaataatagtaacaattctttgattggtgttaagtttcaggaacaaaagaagagaaatg
tgggctgtttttgtccagtactatgtttagaaaatggaggcatagcagtcccaaaggaga
gcttcgcacagccaaatctgggtgttggggtttgaccgagtatttctacaaggacgggaa
aacctagagaggcaggatctgatgctcctcagtgaccaggacctctgtgagctacaacca
aataatatgatatgcacccaaaggtaacaataaatcaaggctaggaatgactggatgggt
attgagattaaatgctatagagagaaagagcctgtttatctggtctggaaattttaaaaa
ttgtcaatccttaaagctaatatgatcactgactatatttcatttctgattatgcctgta
ggaagcccaaaaaggaataagataaaccctcacagtaaaattggatttaatattgtggaa
gaaaataccctgacttttaaattttgtttaaagtagagagctatatgggtggctatataa
taacataagccagatataatgtcaatttaacagagatttagggatagtgttgcatctaaa
agaagagccacagcacagttcattgaatatatcgtcttaatatatgggtaacaaatattt
aaaaccttattgtatgccaagaccctggcctgagccacatgttagcattcacagtaacct
ctaagaacattcctattcaacatggagaaagtaattggactctcttccacatctggcgaa
ctgctaattcgttttaattttgtttacaagctttcttcttgcataaaaaaaatgcttcct
ctgtttacaagtcatttttaaaaatccttttcaatcaaactgatcatgtatcttggtaaa
agcccttccgcatgggctcggggatttcagagtgctgggtcctggccccatgagtaaggg
atcacccgctcatctttcagcccatccaagcatcttggaggtttagaatctgtcaggcct
ggcattccttcgctcttcttatcactctctaccccttcaaaaaggcaattgattagtttc
agcttttccaaaccgagatccgatatgtttttcaggatcaaacgtctttgagaagtccag
agagcaatgtgGGAAGTGGGGAATGTGAAGA
Primer
(+)CACCGCTTCTAAACCCAATACGC
(+)TCTTCACATTCCCCACTTCC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.