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Mouse element [ mm1879 ]


Position: chr13:15,369,876-15,375,085 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

Expression Pattern
forebrain (4 out of 6 embryos) 
hindbrain (rhombencephalon) (2 out of 6 embryos) 
midbrain (mesencephalon) (2 out of 6 embryos) 
neural tube (4 out of 6 embryos) 

Embryo 1

Embryo 2

Embryo 5

Embryo 6

Fasta sequence
TGTCAGGGATAAAAGGCAAAGTaaagaaattaggtccctcagtgaaggtcaatgagaaat
ttagaaagtgaccagtatatggaaaagctttggaacatgatgaaaaaacaaaattttgaa
aacaaaatcataccaaaaacatatggatatattcaaaaattatagaagaaaatgtcacaa
accaggagaggtgcagccagttacaagagactgatagaaaaaccagtagataaatagaaa
aggtatttcaaacaaatggaaatatgaaatgagcaattcttgctattctagtatctgata
tcattcactgaaaaccaaaactaaacagaagaaataaggaataccagtaaatacttttta
aaggaacaatatgccaagaggatattataattctaaatgtatattgaccaaacacatgca
tggccaatttcataaaaaacaaatagtacaaaatataagattatagatgaagcacaacac
agtgatagtgctatggttaatgtactactctcaccaatagaatggtcatcttgacaaaac
taaacagaaacactagagttatatgacctaataagtcaaacagatataacagacatctac
ataatattccatcatacaatgacaaatactcagctcatagcactttctctgaaattgatc
tcctactatgacataaaacaagtctcagcaaatatagaaaaaatattaagtccatatgac
cacaatagaataaagctggatatcaaaaacaataggagtcatagaatgtaaacaaactct
ttgagactaaacaacttgctattgaataataattttgtcactgaaaaaataaagaagaaa
aatttttaattcataatttttaaatattaagctttaaagatatataatgtaccaatgtac
ttaattctatgtcaatatataaactctgtaccagtataagaaataacattataaagattt
ctattaatgtaagattatggctacacagtactttgatcaagaataaaattagtcatccca
tctatttccttcctgttcaaaattatgatcatttccaaattatccctaaaaatgacatcc
tatctataatttataaaatatcataaccagacacccaaacccaagggatcaggatgatga
ctctccacaacttattcctgctgaacaggggcaatgaaaattctttaaagggttaaggaa
aattagaaaatttggttatacttaagaaagctagctttagcatctgttatccagtctctg
tatgtttagaagcttgactgaagttctgacggaatccatatgaaaggttggataaagcaa
gatcatctggaatcaccagctattcctgaaactattttgtaagcaattctctagaaacag
tttcaggaggtagggggctgcaacagcatgtcatttctgcagcccagcagatagataaat
cttgtcagagctgtacattctacaatattctcacaaccaaaatttcagtactatgaagat
attcatatggaatgtgcaaggtgtacagatcaattaaggataaaattttgctccttgttt
aagtagtgaaagataattgccctttttatgagttaatttgatcaataaccaagtgtgaaa
tatcttcattcttaacatatgaaggatggcatgatgaattttaaggattccataaccaac
aatatttattgtctatatttagctgaagttttggctagagacatttttatgtctaagcca
gttatcagtccattcccatgtcaaggaatcggcagatcaagttacctttcctgtttgatt
ttcttgagttttcttttctgtagccaagatcttcaggggatcttcccctgtcatatctga
tcaaatcactaaaaggagtccaaagttgccgaacccactccagtggagtctgagagacaa
gtccaaaagcttagtccctgtcctgaggtaaaaagtttcatggaaactggtctcctggaa
tctttggcatcccataacatggatgtggtccagatatgtccttgtgacagtctggtgaag
ggttttgcatgctttcttccggtattgttttattataagtgccttcaaggaatgatttga
caaatagccaagttagattgaccattgcttcctggcctccaccaatgttccaatatccta
ggcaatcgttgagccgactttggaatttgaattcataagaatgttacttattcagacgaa
atgcctccagtattgaaagagagatggtgaaagaaatcaggtattgcagtttactggatt
agagtagaaatctcaggccaagttctacaaaataaacttgggctcctcattacagtcatg
aatggcagactacattacatattagaagaaagttggtgggctcctctgataaatggaggt
tccctagagatgcttaacaactaagtcattcccatatgtaggaatttacaatggcctagg
aagaaggtgggttgtggtctaagaaggaactagagtaaatacttagaataacagctgagt
cattcccatatacaggaattttcaatgtcctaaatggagaaggtgaattatacaatagtc
tagaattgtaactgtggcaagggcatgaagtccttgcccctggctgctaagaaaaagctg
accttaaggtagggctgaattttatcccaggtgtaaaaactgatttttatcccagttgcg
aacactgtctggctcctgctagcttttatgtgtgcatttctctattgtgtgtagagtcat
tatgcattggatgaccttaatgtatcacctaacttccttgttttcttctgtaatataagt
ctgatgctcactttgagaaattacattcagagtcagcattctttggtgttcatgtctgtt
tttcactcgctgactccttgcccacctgtgtaccaggaccctgatttctcccccaggttg
agggatcaactgagtccagctcatggcacaaagcatttttcctttcctgtcaacgcaaat
acagagcccctctcccaagcttgcatgtacttggtccagaaaccagaaaccaataaagat
aaagattaaattaatagcttgtcccctttccgagacaaattttaatataaccaccaaatt
tataaccacgttattttgataagtaaaacaactcaaaacaattaaaacaatttaaacaaa
tattatattctgttgagagaatacttcctcaccatctcctgctttgatcttacacaattt
atttttaataatgagatcaagatcatgacagcatgtttgaaagggtagagcaggtcaaga
cccagagactaggtgggcacacacctgaagcttaggtgactcccggctccctgccagact
catgtgccttggaacacatgtgccatgcttctctaataaaagagagatcattgaggctca
agacagaggtctccaccccaatgagttacgtagaggcccagagggcatagccaataagct
ttcctttccaaacattcctccctgcaaaaggtatttaatctcaggcccaccctgagaagg
aggaatggttttatgtatccactttccactatggcaataaatgtttcagaaccatgggct
gtctcttttcatcaggagacaccatggggagccatgtaggtcattgcctacagaacctct
gtctaatctcccacagaaggcctctctgcactctcaaccacaactaccaccaaggctgcc
ttaacccaaggactatctaccccccctttccacctccccaagtcaagccaagaactatcc
ccatgggaccagcctgaacccccctttctgcctctctcagggctagaaccagccctaggg
cccccatttcattctcagctctttccaaactcccagcagcacctgggtgtccaagggtct
gaaaactctatggctccccaacccctgccttgttaccacaggcccaaaccagctctagct
ttcccacacctcggactgcacttttccacccgtgatcagtgtcccagggcttccctatgg
cccaacatctgcccagtgacagtgtgggataagggtagtcaaattccgcatgttctgcct
ccccaagtggccgtgtcctgtagcagaatggatgcaggactcacaaccctacaaccctac
aaaggtctactgtctgagataggttaggctccctatcccctgcttattgacctaattttt
aaaaatcaaaagcctcaattatttatatatttttatacatctatgtataattaactcctc
ccttctgtggagattaatattttgtgggtacttatgtcccctttctctttacataattat
caaggcctaagtttttactatttaaggtaggttatgctgcctataccctgcatatgacct
gcaatttaagatcaaaagcataaaagtatttatatatctatgtatttaacttcaaataaa
ttcctttctatttattgtacaggcctatttccaggctctagatttgtcataccaggcaat
cccagaaatcccatggagaccacattcaaagatcttgagtatttgcccttgcaagacatt
ttcaaatcttctttaaagcatttttttcagtcaatctccctaaattctcccttctgtaga
gcttaatatctctctgggtatatatagtccctttctctttatgtaacttgaattaacata
agtttcttatgtatttaactttaattaaattcccttctacttactgtataatcattcttt
aaagcattttttaaaaattcaatctattatatattcatgcttttatttcctacatttgaa
ataaagagcttggatttccttattctatgtatatttaagaacatttaaacaatcaccatt
atactcccttttatccttaaaaacaattaaatgaaattctatatatctctatcctttatt
tactgggttactggagacaggcagcttctattgtctgtctgtctctgtcttcatccaagc
atccagcctctttgctcagcaggggctcccagtgcctgtgaggttaagttctctgaggca
gctagaaacctttagatgggcccaggttaaatccccactggtcctttgttctagtttcac
gccttatgtgagaactacatgacttggctcagctcagcttgctgggaaaccaattctccc
cctgcacctcctaattttatatcatgatGTGTGTGTGTATTCCATTTGGG
Primer
(+)TGTCAGGGATAAAAGGCAAAGT
(+)cccaaatggaatacacacacac


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