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Mouse element [ mm1878 ]


Position: chr13:15,365,514-15,370,996 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTGCAAGACCTCTCTTTCCACTgatggccaagtaggccatcttctgatacatatgcagct
agagacacgagctccggggggtactggttagttcatattgttgttccacctatagggttg
cagacccctttagctccttgggtcctttctctagctcctccattggggaccctgtgatcc
atccaatagctgactgtgagcatccacttctgtgtttgctaggcctgggcatagcctcac
aagagacagctatatctgggttttttcaccaaaatcttgctagtgtgtgcaatggtgtca
gcgtttggaagctgataatgggatggatccccgggtatggcagtctctaggtggtccatc
ctttcatctcagctccaaacgttgtctctgtaactccttccatgggtgttttgttcccaa
ttctaagaaggtgcaaactgtccacactttgcaaagcctgcccgagcggagcggacacct
ctcctctggcagggagggtgcctgggtgtctgcagcccgaaacgcggtctgccccagaag
ccaggacttcttttaatgtgtcaagggaattttgttttgttctgttctgttttcattttg
atttatttcgaggacattttgttttctttattgattgattctttgacacagtgatcattt
aatgatgaattatttaatctacaacagtttcggtactcttactaggaatttgtttggtgt
cgattttcagttttaatgcacggtggtcatattgaacacatgagctatctcaatgtttct
gaagttgttaagacttctatctattttagaaaatcttccatggaattccatgagtaaaat
gtatattctttcgtatttgagcagaatattctatcaatatctttaaagactattttatga
atgataacattaaattttcatatttctgttactttttgtccagttattctacctattgga
aaaagtggtgaattgtaatgactggctatgtactggctagttttgtgtcaacttaacaca
gctggggttatcacagagaaaggagcttcagttgaggaaatgccttcatgagatcgaact
ctaaggcattttctcaattagtgatcaagggggaaaggccccttgtgggtgggaccatct
ctgggctggtagtcttgggttctataagagagcaggctgagcaagccaggggagggcaag
ccagtaaagaacatccctccatggcctctgcatcagctcctgctccctgacctgcttgag
ttccagtcctgacttcctttggtgatgaacagcagcatggaagtataagccgaataaacc
ctttcctccccaacttgcttcttggtcatgatgtttgtgcaggaatagaaaccctgacta
agacaaattggtaccagcagagtggggtattcctgtgacaacatgaccatgttttgggga
ggactgtggaaggactttggaactttgggcttgaagatccatccgttgttaagagctctg
tcagatgttgtgtaggagcttggaagataatgttgagaacagtgcagaagatggaggtct
ggtttgtgaaatttcagagggaaaattaaagactcttttcagagccattgctgttttgat
tgtgaagattctgtagttctggttagctggggctgaagaatcagctgtgattaacaagat
accagaactactaaagcaaaaactttgcattactgggactattgatgctggttagctgga
gctaagaaattagcggtgattaagaagagaccagcatcattgaggtgacatcttctggga
agtgttttctgaaagcacaaagaggctgtgttccagagatggccaaggttgtactcctgc
tgcagcgggacttggtaatatgtaagggtcacccaggtggtactggttttgaaggcatga
aggggtcacgcaaagcagctgaggctcggcactgtgagaggccatggaaggccattggtg
aaggtgcagcctcagttgcaattgaaggcccaggactgaaggggtcatgcagtgttttgg
agatgccagtaccatgagatgaccaccaagagcagcagcagcagtggagtacaggcatct
ggagcctagaggatgacgcgtgtgctacaaagggcatggctggagaagtgacccaagccc
ttggaggagcccagaagatcgtaagttggatcccagacattggacagttggagattgact
tttgcttttgattgtgactgtgccctgatattttccctcttgaaggaagaaactgtttta
gtggagcccacagttaagagacttttaattgtaaaaagactttggattttaaagagatgg
atattttaaagaaattgaaattttaagaatatgtaaagactgtgggacttttaaagttat
ttagatcttggggatgaataagattgtaagggttgaggcttactgtgatgtttttgtgtg
tcaagttgacaaggggtcaattgtactggctagttttgtgtcaacttgacacagctggag
ttatcacagagaaaggagcttcggttgaggaaatgcctccatgagatccaactgtaaggc
attttctcaattagtgatcaagggggaaaggccccttgtgggtggtgccatctctgggct
ggtagttttggttctataagagagcaggctgagcaagccaggggaagcaagccagtaaag
aacatctctccatggcctctgcatcagctcctgcttcctgacctgtttgagttccagtcc
tgacttcctttggtgatgaacagcagcatggaagtataagccgaataaaccctttcctcc
ccaacttgcttcttggtcatgatgtttgtgcaggaatagaaaccctgactaagacaggct
attaaaggattgatgttaatttgtttcttcatttccagtagtacatgtcttatggcattg
aatacactatatatatgcaaaatagcaatatctacttggtttattgttctcttgattaga
atgaagtgtccttttctccttagtttttgtttgaagtctattttattggatattaggata
gcaagatctgttgtttcctggtcacattggattgggatactattttcctaccttgtactt
taaggtggtatctatattaaagctgtgagtttcatgtagacaacagaaagataggtttta
tttgttaatcaattaagccagcatgggcattttgactggagaattgaggtcactaatatt
aaaagataatattgaatgatgcgtgttgattgcagttatgttcttgcatttattgctgct
gttttgctgtctttttcttagggttctggtgccagtacagtagaacaagattgaagcgta
taaataagccaagatcattgctttctcctaaaagcttttctgtttcaggttgctgtgtgg
acttggttcaactattagagagaacactttctcctgaaaacctttttgtttctgtctgcc
atatggatttgattcagctctttgaaaagaaccttctactcctatcctgctttaatatat
aagcctaatatttacaatgtctggaactttgctgtttggttattttaaaatactttttaa
ttaaaatgtgcataatatttcatcagtgctcctttaactctaaaagtcaaaaggctttta
agaaattaagtcaagtcaaaaaaaaatagtggtgaaaagaacaagctaggagcatattga
accttggatagtgaccattacaagcaatcatagcagactctgaatagaagactagggatt
caaactgaagtcctgaatgctagtcccacagaagaaaaacaacatctcaaccattttata
atttagtcttctcttaaatactgtgtatatctctattggggaaaaggtttttttgttgtt
gttgttttgttttgttttaacagaaatgagagggagaaataaggaaggaagaaggcaaac
tcaattagtaaagtggctcagttgaacaagtcccaaagcaaaaccaaaagcaacatgaaa
aaccacacacgtttatccgcaaaaatactaatttcatagttgcgggtgccaatatgaatg
atgtagaagaacttccacacaacaaactcaaaagaatgattataactgtttgaacaactc
aaaattattaatatgctattagaataaaatcaaacagctaaatgaaaggaggaactcaat
ctaagatacaaaaatagaatttaatagataaaattactgaacaaaagtccaattaaaatc
attctggaaatcaaaaattcaataaggtttgaaacctcaatgaaaatcctgatcaatgaa
cacatcaaacaaacaaacaaacaaacaaacaaacccacaaaatgtcagggataaaaggca
aagtaaagaaattaggtccctcagtgaaggtcaatgagaaatttagaaagtgaccagtat
atggaaaagctttggaacatgatgaaaaaacaaaattttgaaaacaaaatcataccaaaa
acatatggatatattcaaaaattatagaagaaaatgtcacaaaccaggagaggtgcagcc
agttacaagagactgatagaaaaaccagtagataaatagaaaaggtatttcaaacaaatg
gaaatatgaaatgagcaattcttgctattctagtatctgatatcattcactgaaaaccaa
aactaaacagaagaaataaggaataccagtaaatactttttaaaggaacaatatgccaag
aggatattataattctaaatgtatattgaccaaacacatgcatggccaatttcataaaaa
acaaatagtacaaaatataagattatagatgaagcacaacacagtgatagtgctatggtt
aatgtactactctcaccaatagaatggtcatcttgacaaaactaaacagaaacactagag
ttatatgacctaataagtcaaacagatataacagacatctacataatattccatcataca
atgacaaatactcagctcatagcactttctctgaaattgatctcctactatgacataaaa
caagtctcagcaaatatagaaaaaatattaagtccatatgaccacaatagaataaagctg
gatatcaaaaacaataggagtcatagaatgtaaacaaactctttgagactaaacaacttg
ctattgaataataattttgtcactgaaaaaataaagaagaaaaatttttaattcataatt
tttaaatattaagctttaaagatatataatgtaccaatgtacttaattctatgtcaatat
ataaactctgtaccagtataagaaataacattataaagatttctattaatgtaagattat
ggctacacagtactttgatcaagaataaaattagtcatcccatctatttccttcctgttc
aaaattatgatcatttccaaattatccctaaaaatgacatcctatctataatttataaaa
tATCATAACCAGACACCCAAACC
Primer
(+)ttgcaagacctctctttccact
(+)GGTTTGGGTGTCTGGTTATGAT


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