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Mouse element [ mm1877 ]


Position: chr13:15,351,973-15,356,744 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGTAAAGGAAAGGGAAGTCAAcacagaaggaaagggagagaggaggaaaggaagaaaaa
tttcactgagttcatctggaaaagccatgaagaaccatatacatatacacatattcacac
acataaatatgtgtgtatacatatatattaaggaaatataccacatattgaatattgcat
ggatttggctcttttgtaaccatgtcgaattatttcaagaaaagcaagataagagcttat
gtcagtaaaagaatatgtgattggcatgggcaaatccaaggattcagtccttagcaccaa
atgacgatagatgataggtagaatgtatatcatagagagataaatagatagatgatagaa
gatagatttcttaagttgtatataatatagattgcttgaattaagtgtgttatttttact
ccttgtgatttggagtctgtattgtctttgactttataacaggctttataaacttttgta
ttgagggccattcacagaaaaagcattatcgctgactaatcattacaagtctctactcag
cactaggcattactttcacttttgttgttgtttgctgttgttgttggagaagttctgtag
tgtgtaattatttttttaaaaaatcaatccatgctatgtccagctatgcaccagcaatgg
tggtctcacccacccccatggttcccttagctgcagtttgtcctggttcctatggcctgc
tggctgctgaaccacttatacttcccagacaacctgccccctgcactagcctgtggaaac
cagctgccactagctttttttctctagccccatataatgaatactccagagacttgtaat
ttaccagccagatttgtaacagtaaaatttcaacccccaaaatgcccacacaaataactc
aaactcaattgatataaatacaagctgcacacctagattggacagatgtgccctacagta
ctcaatcatctatctgtgaagtccccagttactttcggctcctagaaccatgtggttccg
gctcatcatcctcttctaccggttggtcttctcttcacagttcatggatgtatctcttgg
ttttagacataatcattttctcatcacttatcccaacatggccacatggcaattctgaag
gcctctgtgggatgagtgaatgtctactctgaagtagagagccattgcccatctctgaaa
gaatgtgtcagcagcttgattactgatcagagcagtatttgttagcttaaaattcaggcc
cagcctgagggtgttcgatgtcccaatgttggggaatgccacaacaggtagtgtttgggt
gggtaggggaccaccctcatagaggcagggggagggaggatgaaatagggagttcccata
gaggggacttagaaaggggaaaacatttgaaatgtaaataaagaaaatatccaataaaaa
agaaaaaataattcaggcccaaatgtacttcccctcaaacccattattacccactccaga
agctgtcaggatattgttatacagaaatatagagaaaagatatgctgtatgtgttccttc
cacccatgtgtaaatagtatgttcttagagcaatcttagcttggagtactgttgtgggca
ctgagcacatacactatctaaaaatgctaatgtaggatggtaacaggcatggaaacaaag
ggtctttgtgcctagcccatctgaaaaaagtctgcttttgctttgtcacatataaacact
aggttgaattcagtttctcaacattcctccaagaggaagccaggtatgcctttagaataa
tcacatgagaagagctctctctctcggcagtcattacttgcctgtagtcttctatgtggt
agggccttatgagctccccctgtcccattggtgctgactgtcattgttcagatcttattt
aggctgctctattgttgatattttgtaggtgcaacttccctgttctagaaggcacagcag
gtcacctgaaccactggctctacatttttccacccatccattcctgcatttcctgagcct
tagatatagataggtgttgtattatagacagagatgtaccaattggagcaaggcactcaa
cagccagctgttctctccatttttcttatgtacagcttcctttaagggtctccatctgct
gcaaaaaagaagcttctttggggaggaaagagctacactttcctgtgtataagaagaaat
attaagaattgtttagatccaggacagccagcactacacagacaaacagtcgaaaaaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaggg
agggagggagggagggagggagggagggagggagggagggagggagggagggagggaggg
aggttagagattttaccattttgaggaaatgtcaatagtctcttcttctctaggatacat
gacctcatcagtcataggtagctgtctaagtttacagcgctagacactgagtaggcctta
agtctaattaaatagctgttgtttaccaataggctgcacctttaaagctatcatgcttgt
tggtcattgcagcttgtggattacgcagtatatggtaccttcactagggacttactttct
gtttcagatagccaacaaaaggtaatgagaatagtccttggttagagatctcttggcatc
cccaagacaataaattgaaagaaaatttctcatgcctggcattgaggtttttgtgagata
gactatggttcatgggggaaaaattttcacctctagtggcacagcttcatttaaactata
tatttttacttttaaaataatttgagatcataatataatcacataattccccctttcctt
ttcctcctttcaaatgtttctataaatctttccttgatcttttaaaaatatgtgaccctt
tattcattaactgttgtttccgtatgtgtgtataaatgtgtgtatactactaaatacata
agtacaacttgctcaatctgtacaatgcttctttatgtacggtttcaagggtggaaattt
ggtattgaatgaccaattgatgccctcttctatgggaaagcctatttctcccatagaatt
cattagttatctatagttcttgcagcagaagtgagggctctggggaactcccctgtctac
attagcatgctgcttaccttgttcagctcatgcttgggcagtcatgtgggtgagatttta
tgagtgtagcttcctataaacattgcatacacatagagatataaacatttatatgtaatt
ttaggtaaacataaaataatatgattccttaggagttttcaaacatgttcagtattgttc
attacttctccaactctcttccctctgtattgcttgccctcaccactccccatttaaatt
ctccccacttttcaaatttcctacttcatagcacgtattacttcttcttatgttctcctg
agtttctcatgctcccctcacccagtatcttttggttcagcccatttctattgtcactgc
aggttatatatactcacatctataaattaggagaacatgtcatctttgtctctgtggttc
tggattacataacttaagatatttttccagatatatctatttacctgcaaatttcattca
tctttacaatgggactgagttcattttcattatccatccatcagttgttagacatttggg
ttctttccatttctattgagactagaacagcaataagcacggcaaaagaagtgactgtgg
agtaggatctcgagttccttgaacaaatgtcaaagactggaatagctagtcatatagcaa
aattatttttgctttctgagatttatcctccacactgatttctacaatgtctgcagcagc
agtttgtcatctcaccacagcaaattagggctaacctttccccatattctccccagcatt
tgtgatggatgtttcttttgttagtttcatcttagccaggctgacaggggtaagataaaa
cctcatatttgtataatgttttatgtctctgactgctaagaccgatgaatgttgttgaaa
tatttcttagctatttttatttttttcctgagaaatctctgttcatatccatagcccatt
tttgaatgagtcatttgttgctgttttgctgtttatttagcgtctttatatattctgtat
actaatccttctcaatgtttaactgagaaacatttttcttccagtgtggatctgctcttc
acttggttgattatttctttagaagtgcagaagttttttcattttatgaggttgcactta
ttaattgttggctctcattcatggccaaatggagtcctatgcagaaagtcctttcttgca
cttatataggtacaacttacgtttctttttagcagttttggtgtttcaggtttcacattt
aggtctttgatccatttggagttgtttttgtgcatcatgaaagatacagacctaattttc
ctcattattcataaacattcagtttttgcaggccatgttttgaataaaatgtctttattc
cagtgtgttttaggtatctttgccaaatattagatggctgtagttacatgtacccaacta
tgggtcttctattttgttccattgatctacatgtctgtttttgtaccagtgccatactga
ttttattattgtgtctctgtaatatatcctgaattctgtaatgataatccttccagcatt
gttctttttaCTTTTGATGGTTCTAGCCATCC
Primer
(+)TGGTAAAGGAAAGGGAAGTCAA
(+)ggatggctagaaccatcaaaag


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