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Mouse element [ mm1876 ]


Position: chr13:15,331,397-15,336,531 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCACTAGAGGGCACAGAGACAAaatcctaattaacaaaatcagaactgaaaagggagaca
taacaacagatcctgaagaaatccaaaacaccatcagatcattctacaaaaggctatact
caacaaaactggaaaacctggacgaaatggacaaatttctggacagataccaggtaccaa
agttgaatcaggatcaagttgaccttctaaacagtcccatatcccctaaggaaatagagg
cagttataaatagtctcccagccaaaaaaagcccaggaccagaacggtttattgcagagt
tctatcagaccttcaaagacgatctaattccagttctgtacaaactttttcacaagatag
aagtagaaggtactctacccaactcattttatgaagccactattattctgatacctaaac
cacagaaagatccaacaaagatagagaacttcagacgaatttctcttatgaatattgatg
caaaaatcctcaataaaattctcactaactgaatccaagaacactttaaagcaatcatca
ttcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatcca
tcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgttag
atgcagaaaaagcatttgacaagatccaacacccattcatgataaaggttctggaaagat
caggaattcaaggcccatacctaaacatgataaaagcaatctacagcaaaccagtagcca
acatcaaagtaaatggtgagaagctggaagcaatcccactaaaatcagggactagacaag
gctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattc
gacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcacttt
ttgcagatgatatgatagtatatatgtgaccctaaaaattccaccagagaactcctaaac
ctgataaacagcttcggtgaagtatctggatataaaattaactcaaacaagtcaatggcc
tttctttacacaaagaataaacaggctgagaaagaaattagggaaataacacccttctca
atagtcacaaataatataaaatatctcggcgtgactctaactaaggaagtgaaagatctg
tatgataaaaacttcaagtctctgaagaaagaaattaaagaagatctcagaagatggaaa
gatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaa
gcaatctacagattcaatgcaatccccatcaaaatccaactcaattcttcaacgaattag
aaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttc
tcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagag
caattgtgataaaaactgcatggtactggcatagagacagacaagtagaccaatggaata
gaattgaagacccagagatgaacccacacacctatggtcacttggtcttcgacaaaggag
ctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggt
tgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaat
ctaaatggatcaaagaacttcacataaaaccagagacactgaaacttatagaggagaaag
tgggggaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatgg
cgtgtgctgtaagatcaagaaatgacaaatgggacctaatgaaactccaaagtttctgca
aggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatcttta
cctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtgg
acttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattct
cacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatca
tcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggcta
agatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaatgaggaacactcc
tccattgttggtgggattgcaagcttgtacaaccactctggaaatccgtctggcggttcc
tcagaaaattggacatagtactaccggaggatccagcatatatccagaagatgccccaac
tggtaagaaggacacatgctccactatgttcatagcagcgtcatttataatagccagaag
ctagaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatcta
cacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatg
gatggacctggagggcatcatcctgagtgaggtaacacattcacaaaggaactcacacaa
tatgtactcactgataagtggatattagtccaaaacctaggatacccaagatataagata
caatttcctaaacacatgaaactcaagaaaaatgaagactgaagtgtggacactatgccc
ctccttagaagtgggaacaaaacacccttggaaggagttacagagacaaagtttggagct
gagatgaaaggatggaccatgtagagactgccatatccagggatccaccccataatcagc
atccaaaagctgacaccattgcatacactagcaagattttatcgaaaggacccagatgta
gctgtctcttttgagactatgccggggcctagcaaacacagaagtagatgctcacagtca
gctaatggatggatcacaggactcccaatggaggagctagagaaagtacccaaggagcta
aagggatctgcaaccctataggtggatcaacattatgaactaaccagtacgccagagctc
ttgactctagctgcatatgtatcaaaagatggcctagtcggccatcactggaaagagagg
cccattggacacgcaaactttatatgccccagtacaggggaacgccagggccaaaaaggg
ggagtgggcgggtaggggagtgggggtgggtgggtatgggggacttttggtatagcattg
gaaatgtaaatgagctaaatacctaataaaaaaatggaaaaaaaatgtttccaaaaaaaa
aaaaaaaagaaaagaaagtgtggtacatttaaccaatgcaatatcactcagctgtttaaa
aaaatcacataaaaattgaaagcaagtagatggaactagaagaaaaaagtctttctgagt
gaggtaaccgagacccagaaagataaatatggtatatatttgtttacatgtaaattctgg
ccatgaagaaaatgacaaccaaactacaatctgtagacccagagaagctagggagacaca
tggatctccctgccagagggaagagaatcaatttcacaggtagacatggggtagggtaaa
gatgggatgagaggatcagacagggaagggagagaggattaaaggggaaaatgtagaggg
tggagggacaacctggaattggggagcacttaaaggatgaaatggcaatctagtgcagag
gaaacttctaaaatgaagcaatcgtaatgaaatccctaatgatgggggatatgaagtttc
aactagccatctcttgtcactcagcaagtcttccaatagtgaggctaggttacattcatt
tgagttgttggctatgggggtccaaataatccaggctattgctgagacaatagattgcat
tccaaaaactgacagtggagtacaatcacaactcattgaataaggagaagccaagctggt
gcctacatgaagccttcatccctaagttctagtatctttagtacaggactgtactttaca
gactacaaagacaaacaaacaaacataaacaccaactcgactacaaaacctttgatccct
actctgtcctgtctaaaaggtatgacggggcaacagtggcacaaaacttgtgacttgtga
gagtagccaacaatgtctgatttgacataaggaccactccatgagctagaacccatgccc
aaaactgcttaggtgactaagaaccagagactagatagactagagctagagtaaaaccaa
acactgttggtctaaaaaagtattaacaacatgactcctgatgatattatgatatcctca
ttgatgaatgcctattattcagtcatcatcagggacatttcctctctgatgcaaagactc
acaccattatgttgagtctgaattagacccctaccctcagagctcagggaatcacatgga
agacaagagaaaaagtgtaaaagagagcctgaggggaaggtagacaccaggaaaacaagg
ccctttgaatcaactctgcaaggctcatatgaactcacaaagactgaagcaggcagcaca
gcatctatacaggtctgtactagatactgtttttattatagctttcagtttagtattttt
atgggattccttagtgtataaaccagtaggttgctgattcttgtgcttgctctttttggg
ggttgccttgtcaagctttgatgcaatggctttgctttcttttattatatttatttttac
catgtttggttgttatctcttaaaagtctcttcttttctaatgagagacaaaaagggagt
tttttccagaggaaacaggaggttggagtaactgagaggagtagaaggagacaaaactct
taaaaagtatatactgtgtgagaaaataatttattttcaataaaataaaaagaatgacaa
aaaaatccaaagtttcctttaaaacctaaaatctctttaaaattcatcctctcaaattaa
aattacagtttttcccataaaatcaaaaataagttaaatacttccttacttcaagaggga
ctactagggaaaaGTCACAATCAGATCAACGCAAT
Primer
(+)tcactagagggcacagagacaa
(+)ATTGCGTTGATCTGATTGTGAC


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