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Mouse element [ mm1875 ]


Position: chr13:15,321,876-15,326,908 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTTGTGTTTTCTCAGTGGTGCTataaacttaatccttccctcacaagtcacaatatgacc
cctttgctggttgttctcttattttggttttgtagtataagacaagcaatttgataatga
atatgatattaaatattctgactttcttcacttatcacaaagagcatttcataaattata
aattcatgtcattattctaacacttctgtaccatgctctcaattaccattttttatcttg
ccttctgtgtaagtcatactattgtgtattaaggagtcttagctatacctggtacagaag
agcactgacactatgtgaagattatcatccctctctctgttaataataataatcttaggg
aggaaattgacatttctagatgttctatgattgcaaaataataatcatagcaatgcccat
attatcctgagaaatataatgatcattcattaacacagtgactcataatttcaaatttta
tcatttatgtttaattttgaaattgatgaaaattattatttccaataagtaagaatgcaa
gaaacttcagaactcaggggattaaggtggaaataagaaatataatatgaagaaattttg
cttgagatttgtttaaagaattaattgaaaacaaagttaaaaattgcaaaacatttaacc
actcatctttctgagctctaacatagagatgacatttctagattgttgaaagtatcctta
catgtcctacagcttcctcccataattccttcagaaatatgctaccaaataatgaaggac
acaaagccccaagttgatatctcatgtaaccaaatcctacttccagtaccagggatggat
cacatctaatggagctcttggccagtggggtcccatagggaccaccaaatgtcccaaggc
tattggtagctctccaaaggtaaggccgtattattgatgattccacacaactcattggat
gtggtgaagttgagctggtacctatctatagccttcactcctactggagtgctgggatgt
aatctgtatattaccaaaagaaaaagttaaacaccacccagctacaaattctttgatcta
caagacctgtctacaagatgtgctggtgcacaaagcgtggggagtaaacaatcaatattt
gatttgagttaaggtcctctccatgagatccctctcatatacaataagctggagtggcca
tgaccctgagactagataggtcagaaatataaaggaaaactaaatgctattggtccacta
atgtagcaataaaatttctaagccatttgcgattcctctattgtgaatctcagtttagtt
ctataccccttatttgattgggttgtttggttttttggtggttagcttcttgaattcttt
atatattttggatactagcattctatcagatgtggggttagtgaagtttttttccccaat
ctataggtggctgatttgtcttattgactatgtcctttggcttacagaagctttccaatt
tcatgaggtcccatttatcaattcttgatcttagaggctgcgccattggagatctgttta
gaaaattcccccctgtgcaaatgaattcaaggctctttcccactttctcttctattagat
tcagtgtatttggttttatgttgaggtccttgatccacttggacttgagctttgtgcaag
gtgagaaatatgggtctattttcatttttctacataccaactgccagtaccagttgttga
atatgctttcttttttcgttgtatatgtttggcttctttgtcaaacatcaagtgcctgga
agagtgtgttttatttctgggtcttcaattctattccattgatcaacttgtctgtgtatg
taccaataccatgcagtttttatcactattgctctgtagtaaaacttgaggtcaaggaat
gtgatttcccccagtctttttgttgttgttgttgttgttgttgttgttgttgttgttaag
aattgttctctctattctggtttttttgcctttccagatgaatttgagaattgctttttc
catatttttgaagaattgtgtgggatttttttatgggaattgctttgaatctatagattg
cctttagaaggatggccatttttactatgctaattctgccaatacatgagcataaaagat
ctccatttttctgaaatcttcttcactttctttcttgggagacttggagttattgtcata
caggtctttcacttgtttggttagagttgtcccaagatattttatgttgtttgtggctat
tgtgaagggagatgattctctaatttatttctcagcctgcttatcatttgtataaagtaa
gtctcctgatttatttgagttaattttatatctagccactttgctgaagttttcagctgt
agaagttctctagtagagtttttgggatcacttatgtacactatcatatcatctctaaat
agtgatacctttatttcttctttgtcaatttatatctccttgatctctttttgttgtctt
attgttttagctagcactttgagttctatattgaatagatatagggagagtgggcatcct
tgtcttgtccccagttttagtgggattttttcaagtatctctccatttaatttgatattg
gctgtggatttgctgtatattgcttttattatgtttaggtatggccttgacctcctgtcc
ttaatggctggcaaacactgaaagaaatgttcaaagtgcttagtgatcagagaatgcaaa
ccaaagtgaccctgagattccaccttacaccaatgagaatgactaagatcaaaacctcag
gggacagcacatgttggcaagaatgtggagaaagaggaacactcctccattgctggtggg
attgcaaactggaacaatcaccctagaaatcaatctggaggtccctcagaatattggaaa
tagatctacctgaagacccatttttgggcatatacccaaaagatgccctaccataccaca
ggcgcacatgttccactatgtccatagaggcattgtttgtgatagctagaaactagaaac
aatccagatgtcccatggtagaagaatggatacagaaaatgtggttcatttacacaatgg
aatactactctgctattagaaatgtggacatcctgagttttacaggcaaatagatggaac
tataaaatatcatcctgagtgaggtaactcagacccaaaaggacatgcatgttatatact
cactaataagtgaatattagcaaaaaaaaaaaaaaagtagagaatacccaagatacagtc
cacagaactcaaagaggtcaagaaactgaagggcccaagtaaagatacctcagcccctct
tggatgggagaagaaagcaatcaagcaatcacaaggggaatgaaaggagggaaagtggat
gggatggggctgaggggaatgtaatgtgttattgggtggtagagggtggggatggactga
atccctcagggccatcagaaagaatggaaacaggtaatctcaggatgtaagaggttgagg
ggaccttctataatgtaccagaaaactgggaggtgagagactctcaggaatcaaaaggag
ggagggaacttggacaagacgccctacagtgggggaagagaacttgtagagcacactttc
aacagaaagacagggcatcaagagaaaaatggggttgacatctcacagtcaaaactctga
cccataattgttcctgcctgaaagaactacaaggatggaaatgtagaggagcctaaggaa
aagaaggtccagcaacagacccaaagtgggatccagctcaagtgaagggcccaaggacta
acactactattgaggctatggagtgctcacaaaaagggacctatcatgactgccctccaa
aagaccaaagaaacaactgaaagagtcagatgaagagagttacatcgaaccaatggacag
aagctgctgatctctgtggttgaattagggaaaagctgaaagaagctaaggaggagggag
acccagcagtctcaactaacctggaccccctagatctttcagacactggaccaccaaaca
ggcccccaacatatataagcagaggactgctaggcttgggtttagtcaaagaagatgcat
ctaaccctcaagagactggaggcctcagtgagtttagaggtctgggagggtagggagtgg
gggaatggtggtaggggttgggacatcctcatggacacagggggtggggaggagatatgg
gatgtggaacagttagaggatcgacagggaggggaataaaatctggagttttaaataaat
aaataataaataaataaataaaatatagtaataaaattactgctatacttatagtagtat
gttgctcagtcattatcagagaagcttcctcctacagcagatgacatcaaatacagagag
ctacagccagacaatatgcaaagaaagagagaccttggaatgctcaactcaaaaatagat
gtctccataaaatccctcctctaagtgatagggaattctgtagaagaggaggcagaaact
atgtaaaagccagaggggttggaggacactatggaatcaaggttttgtagatacaatagg
gctggtgcacatttgatataatagggctggtgcacagagactgaaatagcatgcacaggt
ccagcatggttctacactaaatggggtcctagagcttaaaggagaagtggacatatgccc
ccctcctgaacccagaaactatttctaattgatagtcacatttaaatgaaaaatttgttt
tctccaagtaagtctcacaagggaaacaaacaattcttaagtgtaggactcatgcctagc
agtagttggccaacataaaatgaacccactggcatttttggaggttcttattttcatgat
tttatcagggcattttaattttgtacctttcatgtcctttgcatttatactatgacttct
agtttggatttttgtcaggctactctgtgtgTGAATCTGTGTGTCCCTGAATC
Primer
(+)tttgtgttttctcagtggtgct
(+)GATTCAGGGACACACAGATTCA


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