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Mouse element [ mm1872 ]


Position: chr13:15,303,000-15,308,002 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTTGCCAAATGTATCTGTCAGAAGtttctccattctatttttctcaggcttttccttcac
acacatcactaccaccaccaccaccacacacacctcacaggtatgccttgagtcaatttc
tactagcctaataatataggtgctgacatcttgcccaacatgaaagccagaaatcactgg
ccttttatacccaatgcccagtgccttaagcctgcatccctttcaaagggtcttcctgca
gacacttggccaggaccttctatttttgtacttttccagggctcctgtggatccatacct
tggcttctaaagaaaagcacagcacaaggacccatttcgtgcttccattgttgttgttgt
tgttgttgtggtggtggtggtggtggtgaaaaggtcagttcaggacattttgaaaattac
accagagccttctccatcagaaggggaaggcaggaattaacattccgcaggatggacttg
caggtgggggaggcctagaccaggtaaacacattctgcaggacagactctgtacctcatt
ccccagagaccaatcaatttaaacgtcacactgttctgccaatcacattgtgcctagtgg
ctgctgctctgaaaaactgtataaagactgaccaaatgggctggaggcgggcagggttcg
ccatctcttcttcatgataggatggccccaacacattggaacaataatttcctcttgctt
tttgcatcaattcctgctccgtgtgcttcactcagggggtccctcaataagctaaggctc
accagagtcttacagttgttgttggttccccagtcttcctcccattttacttttaccatg
caccagtattcctacaaactctgaccagacccttccatgcctttcttcctgggcctccaa
gagcagggttgtccacctcctaccatgctagtatctgtgcacctctaccagtctgaacta
tctgggtctgtcaaaaccttacaaagtacttgtgacccttcccagccctccctgcagact
cagcagggcaggcagcaccgatgacctttgaaatcacgttctttacaaggacaaggagag
agctgagctgtgtttccaaggaagctcctaggttagcagacgctgccctgcaccgcagca
ggcaccagagttcctgtcaccactggaagaattctctggctatgtgatctttggttccag
cctttctagtgaggttccagatcagccccatatatgcttttattgccctcagtggccccc
agccctcatctgagtcacttggcagtatttccagtggatagcttggtcagctcagagggg
ctacacacatgggtggaaggacacaggttacctcatggttaatgtttctaagagaaatgg
tttcctgaacagtattctcctcctgccctacctcctggctaaaatattaacactccccaa
cctcaacacttcatcctcactgtcctctactgccacagtcaacaggcactgggaaaacca
cattccttgccgtgcatcattctagactttgtacagttcctgggtttttaagtcactcct
caccctcgatgattccttccttgccttcgtctcagcttcagggttcatgtgtatgtccac
ccagatgagggctctgcaggcagtactttccttctggttccctttctccagcagggccaa
ccacggctcacagcagtagagtcagcagcatctggcttgggttggtctgtgcatatctgg
aatccaaacagtttaaagagttatggctccaggaactgtggatggcaacgttttctatta
ttaacagttccaactttcccatctggctgttttcagagtgaaagctggagattactgtca
gcattaattacaatcaggtgcacttttcttctactccatgttgtcctgactgcttctcac
acagcaagaaatccttaaaatgcatgtgccttgaaatgtagcgcataaatcctgctgctg
gtgagagcagctgtcagccccctgagctctttctggacttgggtgagcctccccaaggtc
acgaacacttcctcaggtggagaggtccactggagtccttggcgctccaccacaggaaat
gtcaagagaattggtaactttgtgagatttctggcacttcctgcttccagtctcaccaga
gctacttcgcagcatgttgtgtggaatgtctgccttcaggatcccagctgaatcagaagg
caaggtcacaaaaacaaaacaaaacaaaacaaaacacccccacaaaacacatacaaacaa
aaatgttcgctcccgccttgggcatcacagtcctacctgcttgtcgactcttttcatcca
gcttctcctgtatatttctagtcagtgtatgaaaataactcgattttgaagtcactcttt
cccgtcatgtccttatatgcctattcacatgcttgttgctatgttctctggcaatttctt
tttattactctcattatttttctcctcagactctatgaacctgaatccacacaacaggaa
cgttatgcttttgtaaaaacatctgaatttaattctgattccccattatagggttttatt
tattcctttgtaatggctgtgatagtaaaggcgtgtctctcccgttgctgagggactctg
ggcaagtttccttgctgtattatagatcttcactgtcccccacaagatctgtgtagtgat
ggcttgtcccccagatggtagaacattcaaatgttggagcctagtgaaagatcactaggg
atcacttcagaagcagcttatgcccctatctccttctttgatcattggccacaaggtaag
cagtttccctgccaacaactaataatagaggcagttaatagaggaccatgattcaaaaca
actgttctcttttagaattggtagttccagtattctcttgtagtgatggacaggctgctt
aaacctgctgaacttattaagatctgcaaactagagttgctagatattcacaaagtagct
gagatggcttagacaagaaatgacaaggttgtaggtatgagaggctgtttgggagcatgt
tgcatgatttgggctgttagaagaaggatcaattctattaatattgtccatagggatttt
tttcttaaagggagaaggagagattactattgtatactacatatatggaagtggtgtgtg
aactctatgcttttgattctgttatctttacggaaacctgatcttcataggcctttcctg
ttatctgcagctcatgcacctgtgttccatcccccaccttcctgaggcataccactcaca
aaatagtgaacttggtggggctgagggtaataaggaccatcttgtaagatctacacagga
cttgcttcctcaatgagacagagcagaagaatttatcacaaccacattggttgtgctgct
aactcagtccaggtcatgacttgcttgacttcaccaggttgtgttgcttgccggtgtgag
ttctgttctgatacctcttctgcccattctacctgccgctggctgcgatactgtgcctcc
tgcacccctgacacagtgcatcttagccatggctctgtcgaactactacagctacctctc
agatgggttctccagctgcattcataatcccggcaggataaatgaagtttctgacagtta
atttatttgcctgatctatttcagatgtctcttcagacaaagcactgggttagtcctgcc
ggttgtcttgaatcggatattaggtgagaacacttccggacaccaatcaatgaggagggc
attaattgtatttgcacacagtgagagagttcagaaaccttctgagcctgtaatttttct
atttcattaaactcaatggaagctatttctgtggatctcctcagagctggggcactcata
cctgtactcagagctgcaaagatatcatcagtccctagagaataagggaaatacattatg
cagatagatggcttagtcaaacactctcttttccagattttaaataattttatatgagtg
gtttttatttgtaaagttggcaagtcttatttcttcttgcatagctataaaactttagga
attgtgtctccacttgaccatctgtcccatgagctatggagtatggagtacacaaggaat
cctctagggtcagcaggacacacaaaagaggttatttgctgaataaaaataaaattctga
cgtgaatgtgatgttcccagtatacccattctttgggcagcttttgcactggggaagcca
tagctatcactggggtgtgactgttaagggcactccctagacatcagaccacccagctgc
cttcacatgagggagagaggcatccctgtactagtgataaggatgtaacatctggaatca
gacagattaatatttcaaactggcccctgctactaacactgggatataaaagaccaatcg
taggatttctagttctctgtctgtgcaatggacttctgagaatttcgaggatttaataca
aaaatgaatataaaacttgtaggaccgtttcaaagcctggcagacagaactggctatgtg
tgtggtatctttatgatggtagcccaggatggataaagagacaggatccacactgggatc
ttctgactttctttttactgaggtattaactctttctatcctaactactagagtataaaa
ctgtgaagtgtttgaggctacatgacaaatgcctactttgttacttcaaacagcaagtgt
catattttctggatttacatgggttatgggaatgggcactgcttaactaggaaccatggt
tagagtgtccaaggtttctttggcctgttgccttgttttggagtctaggagagaaacaac
ttcacctctagagtcatttcaggccctggcagatggtgaatcccttctcattgtggaact
gaggacactttaacaaccaacacaactatccctagctcctaaaagctgtctgttgttgtt
gCTGTATGGGCTTTTCTGGAATC
Primer
(+)gttgccaaatgtatctgtcagaag
(+)GATTCCAGAAAAGCCCATACAG


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