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Mouse element [ mm1871 ]


Position: chr13:15,294,257-15,299,632 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ACATTGCTGAGGTTTCCTCATTgcacgagatagggtgatcatgatttccccattaattca
ttttctggctggcctcttttgtagagttcgccctaggtcatttagcagttactgtcacac
agcaccgtggtatccagagatgggcaactttcctcatgcactgaccaacctaagacacgg
ggcccggtggcaatagggttaccctatgacaggtaaggctgtgacattagaggaacgacc
tgaaacaggagccacggcggatggacataattgcacaggcctagtccagcctcattttat
taaaacaaaaagggggagatgtgggaagccacatgtgccgttgcagggtggcgctggcta
ccgctggccaccacgcatacatagacagtaaagtttttttgccaagatgaggttttgaga
attaaccaatcagatgtaggcatgcaaatgaggtggtaagcataacccatgcataaccaa
tccgggtatgagacacacctctcctaggcctatataagcagcaccagttctgggcttggg
gtctcttcgcctctgcaatcaagctctcccaataaacgtgtgcagaaggatcctgttgca
gcatcgttcttgctggcgaataagggcgcgcgcaagacactggtaagtggatattagccc
agaaatttagaatacccaagatataagagacaatttgcaaaacacgtgaaactcaagaag
aatgaagaccagagtgtggacactttaccccttcttagaattgggaacaaaacacccatg
gaaggatttacagagacaaagtttggagctgaggcgaaaggatggactatctagagactg
ccatacccgggtatccatcccataatcagcctccaaatgctgacaccattgcacacacta
gcaagattttgctgaaaggaccctgatatagctgtctcttgtgaggctatgctggggcct
agcaaacacagaagtggatgctcacagtcagctattggatggatcacagggtccccgatg
gaggagctagagaaagtacccaaggagctaaaggggtctgcaaccctataggtggaacaa
caatatgaatcaataccccccgaagctcgtgtctctagctgcatatgtatcagaagatgg
cctagtcagccatcagtggaaagagaggccccttggtcttgcaaactttatatgcctcag
tatagggtaatgccagggccaagaagtgggagtatgtgggtggggggggtatgggggact
tttggggtagcattggaaatgtaaatgaagaaaatacctaattaaaataaaattaaatga
aaaaatttaaaaaaaaaaaccaatttcagcctctctttcagcagaaactttcactgtaac
attgtttgttagtgttctttttctatccaaactgtactatttgtattttattctgccttt
tttattcttttttattgttgacctgcacaagtatgattagtaattaccacaggacaaagt
caatattaagctgttttgaaacttctccattaggaagttattttttcaatttaaaattta
aaatataaatttagccttgagcaagttattaggctgtgggcatagggtaactacattttt
ggatgtgggcggggagtgttaaaatatcacagaaataaactctagctcagttgccaatac
tggtcctttctgaagcctcttgaactttacagtccacagagttcttggcactactgtctt
ccaagctcctgcttgtacagcctacagcctcttataatgttcaactggttttctagtcca
aagatgcaagtcttcaacatttctcaaagagcaaataattatagtcagatattttacagg
tgcatttatctgagcgtacagttccaggggtaaaagagttcatcaccattatgtagaagc
aggcattgcagctataacatcaagatgagaattcacatcttgaaccataggcatgaaata
gagaaggaactaagactgttatgtagcttttgaaatcataaagcctgtctaaatgacata
cttcccccaggaaggccacacattctaaacccttccaaaaaatgccaccaactgggatcc
aagtactcaaacatacaaacctatggagaacatcttattcaaaccatgagggctttaagg
gaaaatgacaagaaacaatcaaatgttttcaatagtacctggccctgggtgaaggctcat
tcatgctaagttttaacattaattgcttctggcaatttgagggcaggttgatcacaaatc
tagatttaggtagaagggaactaatgagagtgtataaagaatagactctaaacccgaaat
caatggtataaagactctatggaattagagcagtagctgtttggaaatcactgtgttttc
tagaaatagcttgaggtcccagtataatagacatttaataagtttttattagttcaacca
ctaggataaagacagatctagactaactagtgtagaccagaagtattttgaaagtagaca
gtcacaatgttatatccaaaatagtagcatgctctgtgtggtgcagttctcatgatctat
tggtaggttctccacaacacagatgatgatgttccaaaactgaaaccctggaactgccta
cacagcttgtagggaactcagcagtcaaaatatatctgacttacccagtttggcagttca
gagtctccaccctagcaactgtttattcctttttaaccaatgctggttagggaccctcat
gaatcttccaaatttctgttctctcaaacctaatgttttgttacttctgaagcttggtgt
ctttcatttttcctgtagcaaatgtttcaatttgcaagaaatgctgcaagacctatgaaa
gcaccaaactgtaagttcttcctacttccatgttaagaaacttgagaaccactgtcttat
aactctgtttctcccattattctttccccttcacccatatcgccttcattctctctcttc
acttgagatgcctcacttgtttcttattagtttcctgacttttatgagtattctaatata
tatgtaagcactcaaaactagcattcacttatgagagattagagattattttgtcatact
ccagagtgaccagatagactttccagatgcatgataattgctgagccacagaatatatca
aaagggaaccaactacatgacatttaccacaacatgtaagagatacagattggtatagtc
tcttaggcctctgaggccagcttttggggtatcgtagctatttttctattgctatgagca
aacatcatgaacaaacatagaaaaagtatatttgaacttatagttccaaagagttgagtc
tgtaacagtaaggaagggtgcatggtagcaaacagcagtcttgatatctggtccaagaag
cagaggattgataccctgaactttaagtatcaaccagagagactaaaatagaaataatat
aagtctttaaacactcaaaacctgacttcattgaaatactttcttcagaaagacctattc
tttctttttattttattttattttattttgttttattttattttattttattttttttta
ttttattttattttggtttttcgagacagggtttctctgtgtagccctggctgtcctgaa
acttactctgtagaccaggctggcctcaaactcagaaatccgcctgcctctgcctcccaa
gtgatgggattaaaggcatgcgccaccactgcattgctagcaaggcctactcttaagcat
ctgcaaaagtgccaccaaattagggactaaatattaaaatgtcatagaatatgtgagaca
cttatcattcaaaccaccacattctactacttagccccatacttttatggtcatatcaca
atatcaaatgcaataagtccaacatcgtttacagtccccaatactgttgaatagtctaaa
atctcttctgagacttaggtcaacctcttaattataatataatgtaaagtcaaaaatcaa
ataatgttcttccaacatataatgacagaatataaattataattcaaatgtgaagaaatc
ctccacaggaaaatcaccaattgtttagctctaggtctgatttcaatggttcagaaagct
tctgtgccttcagctttgctgacaggaacatatttttctcttttacctgggtctactacc
tgcatggaactccctttggcaagtatctcaaagctgtggcagctccagcatctcggggtt
tccaatataacccaggcctcacctagacaacttgacactaatttctcttgggacttttgc
aaggactccatgttttctggcctcaacatctcactgaaacatcagagaaagactccataa
tccctttacttatgattcctagtaaccacaagacaaagtcaatattaaaggatattaaaa
tatccttcattcaacacattagtgcataccttacaaatttagtctcagggaagttcttcg
aacatgggcagaaggtagctgtattcttggtcaaaatatggtatctatcagagttcctat
tatattctcctctgaaacatcttgagctgggcctccatggtttgcataactctcaacact
actgtcttctatgtccctagcaggatggtccgttaaattctgcttacaatgttcagtcat
tgttctagcccaaagttccaaagccttccacattcctccaaatgtctaccatgaaaaaat
agcctacaccctgatatattagttacttttctaatacagtactaaaatatcatgacaaaa
caatttgtaaaaggatttgtttgagtttatggtctcagagggttagagaccatggtagtt
gtacagaagcatgatagcaggaaccggaggctgaggactcacatcctgatctgtaagcat
ggagcagagaacaactagaagtgggcaacaagtctttaaattctcaaagcatgccccaat
ctctgtacttcctccaacaaggtgacacttcagaaaccttctcaaacagtggcaccaact
agggaccaagtattcaaatgtccagtaatacccgagacatttaccatttaaaacaccaca
agatgtcagcctcattagaagggagaaagcaagaaagagaagggaagaatagctcaaact
tgtctaagtggtgatttactttatcgtcacagacactatctaggttaccagtcacaagtc
aagtctacaagtcctggagtccacaggaaaaacttaacctgaatctcggactccatttaa
cttagcataaagctcattaccccttgatactaatccctagttctgtacctgctgtcttaa
tgaggtcttagtcaTTAGTTCATCCTCACATGTGCC
Primer
(+)acattgctgaggtttcctcatt
(+)GGCACATGTGAGGATGAACTAA


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