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Mouse element [ mm1870 ]


Position: chr13:15,289,572-15,294,499 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGTTTTTCAAGCAGGCTTCATCccagggatgcaggaatgggtcagtgtatggaaatccat
catcataatccactgcataaacaaacttaaagacaaaaaccacatgatcatttcaatata
tgctaaaaacaattgacaaaattcaacaccccttcatgttaaaagtactagaaatattag
gaattctaggcccatacctaaacatagtaaaagcaatattcagcaaaacagtagccaaca
tcaaactaaatggagagaaacttgaggcaatcccgctaaaatcagggactagacaaggct
gcccactctctccctatctattcaatatactacttgtagttctggctagagcaattagac
aacaaaaggaggtcaaagggataaaaattggaaaagaagtaaaaatatcactattttcag
ataatgatagtatacttaagtgacccaaaatattccaccagagaactcaaagtggctgga
tataaaattaactaaaaaaaaaaaaaaaaaatcagtagccttcctctactcaaaggataa
caggctgagaaagaaattagggaaattacacccttcacaatggtcacaagcagtataaaa
tatcttggcattaactctaaccaacaagtgaaaggtctgtatgagaatttcaagtctctg
aagaaagaaatcgaagaagacctctgaagatggaaagatctcccatcctcatggattggc
agtattactatagtaaaaaatgaccatcctgccaaaaacaatctacatattcaatgcaat
tcccatcaaaattccaaatcagttcttcatagagttataaagagcaatttgcaaattcat
ttggaataacaaaaaaaaatgcaagataggaaaaactattctcaacaataaaagaactgg
ggaatcaccatcccttacctcaagctgtactacagaccaataatgataacaactgcatgg
tattggtacagtgacaggcaatttgattaatggaatagaattgaaaacccaaaaataaac
cgacgcaccttgggtcacttgatctttgacaaagaagctaaaagcatccaatggaaaaac
gccagtattttcttttcgtttttcttttcttttcttttctttccttttctcttatttttt
cttttatttttctcttcttttctttctttttttagatatgttctttatttacatttcaaa
tgttatccctttcctggtttcttctccaaaaacccccatctcctctccccttcccctgct
caccaacctacagactcctgtttcctggccttggcattcccctatactggggcatagaac
cttcacaggaccaaaggcctctcctcccactgatgacaaattaggccatcctctgctaca
tatgcagctagagccataagttccaccaagtgttttctttggttggtggtttagttcctg
ggagctcaggggtactggttggttcacattgtagttcctcctatggggctacaaacccct
tcagctccttaggtcctttctctagctctgtcattggggaccctgtgctctgtctaatga
atggctgtgagtatccacttctgtatttgtcaggcactggcagagcctctcgggagacag
ctatatcaggctctaagacagtattttcaacaaatggtgcatgttcaactggcagtcaac
atgtagaaaatacaaattgatccattcttccctgtacaaagctcaagtccaagtggatca
aagacctccacataaaaccagacacactgaatctaatagaagagaacatggggaaaagtc
tcgaacacatgggcagaggggaaattttcctgaacagaacaccaatggcttatgctctaa
gatcaacaatagacaaatgggacctcataaaactgcaaagcttctgtaaggcaaaggaca
ctctcaataggacaataacagcgaccaacagatttgcaaaagatttttaccaatcctaca
tctgatagagagctaatatccaatttatacaaagaactcaagaagctagactccagagaa
ccaaataaccctattttaaaatggagaatagagctaaacacagaattctcaactgaggga
actcgaatggctgagaagtacctaaagaaagcttcaacatccttagtcatcagggaaatg
caaatcaaagcaaccgtgagattccacctcacaccagtcagaatggctaaggtcaaaact
tcaggtgacagcagatactggtgagtatgtgaagaaagagaacactcctccattgttgat
gggattgcaagctggtacaaccactctggaaatcactctggtggtttctcagaaaattgg
acatagtactacctgaggatccagctatacaactcctgggcatatacgtggaagatgctc
caagatataacaaggacacatgctccaatatgttcatagcagtcttatttatagtagcca
gaagctggaaacaacccagatgtccctcaacaaaggaatggatatagaaaacgtggtaca
tttatacaatggagtagtactcagctattaaaaatgacttcattactttcacattcaaat
ggatggaactagaaaatatcatcctgagtgtgaggtaacccaatcacaaaagaacacaca
tggtatgcactcactgataagtggatattaggcaaaaaaaaaaaaaacaaaaaacaaaaa
acaaaacacaaaacaaaacaaaacaaacaaacaaacaaaactctccgaatatccacaatg
caattcacaaaccatatgactctcaagaagaaggaagaccaaagtgtggaggcttcagtc
cttcttcgtagggggaacaaaatgttcaagggatatagagggtaggagggacttgggatg
gagagaaaggggcagggggcaagaaaagcaggatcaggtatgggaggagacagggctgct
aaacagagggtcaggaaattgaacagaggtgtgtagcaatgggggatggggaactggggt
agccaccagaaagttccagatgccagaaaagcaagagtttcccaggagcccatggggatg
acattagctgaaataccccattaaagggagggagaatctgttaagactatatccagaggt
taggcatggctccctggttgagggatggagttacccacccatcttcaaagtttcaaccca
gaattgcttctgtctaaaggaaatacagggacaaagagtggagcagagactgaaggaaag
gccaaccagagactgcctcacctggggatccattccacatgcagacaccaaacccagatg
ctattgtggatgccaagaagtgcttacagacaggagcctaatacaactgtctcctaagag
tctctcccagatcctgaccaatacagatgtggaggcttacacttaaccatcggtgagcgc
aggagctgaagaggccttctctggcatcaatgggaggggaggccctttgacctgtgatag
cttgatgccccagtgtagaggaatgctagaaaaaagaaaaagaaaggagacaccgtgtta
tcagatggacagaaaggacaaaataaaagagccgaggcggaggaggaaggtgaattagct
tctgtgccccctccctatgcctcctcggcagccacctataggtggaccttctgttcggag
gtttggagagaggttagattctccttgctggggtgtcctattttcaccgaccaagcaggg
cagagatatcatgagcctctagattttaaagtattcaggaacttggctgagtccatgtgg
acgtacggcttaactgcctcctatactgtggctcaagtagaggccttgaatagacactgc
atgatccgattgggcagtcttggtgaaggcatgcctttcacctgggcagtatttagattg
gaaggccttccttattgaatttgcaaatgaacaggcagctgctaactctgatgcaggaaa
tccagcatgggatagggatatgctgcttggtcaaggtcgatttgcacaacaacagacagg
atatccactgcaggtgtttgagcaggtgaatcagattgctataagggcgtggaaatcatt
gcccaccagtgttggtgttgacgagggcgagagggtctgtttgcctgtttccccaggatt
actgacaacagctgtgggtcccagaacggctgaccagagcaattcaaaacaggcagagct
atgaggacatagatgttcctgtggctgggggtgctcccgctagtgaaaactgaagagctc
tgtgttcctgaaaccatcccattgatgtattccggtgtttcctcaattctttacatctaa
tgccagattttaagccttaatggaacttgaatagaaaccatcattgttggcaattttacc
tcttggcttacctctgctttttctaactttaaggaatgggtgggagtgattttgtttggt
gctgccatatgctgtggactggtgttcatgctcagttggtatgcaaattcagaacccaac
aaaagcgtgacaaggtgattataactcaggcactttgagctattgaaaatggcgcctcct
ctgaagtttggttatctatgctcaagaattagtcaacatctgagttctctgctcttgcac
cccatgaatttatggatccattgcactgggatgagagagactcaagatcattgatcagcc
cttgcacattgctgaggtttcctcattgcacgagatagggtgatcatgatttccccatta
attcattttctggctggcctcttttgtagagttcgccctaggtcatttagcagttactgt
cacacagcaccgtggtatccagagatgggcaactttcctcatgcactgaccaacctaaga
cacggggcccggtggcaatagggttaccctatgacaggtaaggctgTGACATTAGAGGAA
CGACCTGA
Primer
(+)AGTTTTTCAAGCAGGCTTCATC
(+)TCAGGTCGTTCCTCTAATGTCA


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