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Mouse element [ mm1869 ]


Position: chr13:15,284,697-15,289,950 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTCATAAGGCCAGAGAAATTGGagctctgggagatgcagggaaacaggatctctgcagta
gagagtgcacatcactgttcctctgcctggtggttctctctaggccaagaagattgcgcc
cacccacactggaaggataggtcttcatcatcaatcaattgaattgcatatgagctgctc
tggggatcccataatgcagtcaaattgagacaaaggtttgcccaatgccaagttcctctc
ttggttcaggacacatcccactagcatacactctgaaaaggagctcattcccctctgctt
gctttcaggaagagttcattctatcacacttggtcaatgtattagtcagggttctctaga
gccagaaaacttatggaatgtctctctatattgagggaacttttgtgttgactcatagtc
tatagtctaccctaacaatggtcagatgggagtggaaagtgcaagaatctagtaggtgct
cagtctcacaggctacttatttcagctggtcttctgtagaagaagattccaacaaatgtg
ctggaaagtaaatggaagcaggcaaagaagagcaaatctttcttcttccaatgtccttat
gtaggtctccagcagaaggtgtggcccagattaaagatgtgtaccaccatgcctggatct
gggacttgctttgtcccaggctgaccttgaactcatagatctccttgccttagtgtcctg
gggttaaaggtgtgtactaccttacccaggcctaagcatttcatggtcactatacctcaa
gatctctatcccaagatcctggtgagaaacttgtgtcttccagcctcaagatctagatca
caggtgagtcattctggattgcagttcattcagatatagtcaagttgacaaccaggaata
gccattacaatcaacaaagtacagaatgactaaaagctaacaatatttacatttgtatct
atcgtcttaccacacatctccagaggtagcacccaaggacttcagtagattctagaatcc
acagctaagggaatggactattccaggcctcaattttaggtcccagaaaatagagtccca
aaaccccagatagacaagtagattttgtgtttgggttcatttgaattaatgaattcattg
aattaatgcactccgggatggctatgaacactgaggacagcctggaaccccaaacaattc
caggaggcattttgatggcctcagcggcaatgtgatcactgctcccactgaatatatgtg
taaataaggagctaaggtagattccttagctagaacaaggctgttagcaggtcaggagcc
ctgggagaaaggctgtctattagaaaggatggcctagcacttgctttaacagagacatga
tatactacctatcattgttttcttttctccttttgaataccttaagtagtctttaaaaaa
tataaagggaaaagcacacacataggctcacgcaataaaaagccagaggcagccagaaga
gggcaatagcagaggaggccactttcaactccctcctatcagacagctccttagagatgg
aatccagtatggctgggtgtgttcaggacagatgcagccagtaggagcatggaggcccta
actaagaactccagactctgcttctttcctacaaggtccttaaactttagttaggccctt
aataaggagccatcagcaaggcctgcttcagtagagggacagggttaaattcccacacat
gcctaaagtcacttgtcttgtgatggcatcacttcatgtcactgcatcctgcaacctggc
atctttactgccgaataaaaatcataagaaaaggaaacagaaattcaatgtagcccctag
aaagcctaaccctactttccagaaagtttcatgttcttttgataaattctgttcattttc
catgtagcaaatgtactttaacccaaattagaggttgtgtgtcatcatgctactcagcaa
cactagctttatgacctatgggtgttagaaaacatctttgtatgtgtattcttttggcaa
gtgacctgtaccccaacccctgccatcctcctaccatgttcagtttatggcactggtctt
ccacaacatagctatgttggcctctggggagaaacagactggattatatctatagatttg
ctgagctgtattctccaaacactaaagtacccttctctctccaaaacaacacaaaactga
aagaacacatcagccagctctataccacggatctcagcacaggttccagaacaatagcaa
gcaaacagtacggagccagtcctagagaacaagccctcgtttacaagagttgctgaaccc
cgaacaagtctcaactcttttccaatgatgttggtcacattgtggttacctcagggataa
cctccatctgatgtctgactcctcataaatgggaactaagagcaccaatcctacagcaag
taaattacctgtgttcaattataattgacctactttactgcaagcattgcacttggaaaa
ttatagcttcattgcgatggagccagaaagggttaatttacctccaaagggagcataatt
cactccttcctttccggaagcattggatcaagaagtaattataatgactgacagccatat
ttatatttttattggattattattaagcattatagaatccatcctcattacactagcaat
tccactttaggtagatctagagaatgataattaggaagccatagaccagaaagttctcct
ttatgaatttaacattttttaacggatgaaaggtcctatcataaaggggcaaaagagttg
atctgtttcctgagtgcacaacagaatctactcactattattcaggctacagtagtagaa
actactactgccctacaggcttctctcagtagacagacactaagaatatttttgcaaagc
tcaagggccaccttcaaaagaaagagagagagttgaacagttaaggttgcatactgctat
tgcagagtatcagagagttcattttcaagcaatccatatagtgactccatccagctccag
ggactcagcacctctgacatctaaccataggcacctacattctcgtttacatatatatac
acaggcacatatttattcacacaatttaaaatgaaataaatcttaaaaaactgcaactgg
aaggaaaaactggacactgaaaggaatacttgggtacattttaatgtatatctatttatt
atatgtcctgtatatgaatgcatgttgaatataatctatagcaacttgtaatgggtatta
tttatgtgtattattccttctatcatgtggctttatagtttgctctctattctttttggt
atttggggtttacatatgcttattaatttacttttgtttgttaatttgtttattcttttg
ctggaggttgttttttatcctatcaggaacccaatcattttggaaacaaatagtctttat
agttacactgataattaattcgatataattttaaaatcctctagtatacatcttttttcc
agaaaggaaacaagggctttgaacctttaccagtctgagattgtaagcctgagaaatgag
cactattagtgttactgcttctccgttcccccttttggtctgccagaagaggagaaggtt
ctgatgtttacagtcatcctatacttatcattgtttgttaacattgtttatattttcctt
tttgtttcattttattttgggctttccatttgattttctaacagcatccactgcaacagt
tagctcttgtccaacatttactatctggtttccataccaccattattccctgacttctgc
tggtttaattttagcatatttaccattcagttctgtcatgcctgtgagcatttttttctg
gctgtcctgcaactcactttgtagaccaggctggcctcgaactcagaatctgcctgcctc
tgcctcccaagtgctgagattaaaggtgtgcgccaccatgcctggctggcctgtgagcat
ttttagaatgaacatcaggtggttcactgattaacttttcctatctcttcatattagtgg
ctcatttctttctcttagtcctattctcttggtctcttagacacaggaatttcttcctat
tttccttatgctcaatgttcagagtattcttcatattgaagcttgccaataattatagca
cagggaatcatgagtcatttggtcccttgcaaaaatcatatatgaacatgcacagagtct
tctctgatctgaaatagggaattgccttatttgcataggtccctataaaggtatggcctt
taaggctacagaatcactgctcgagtaatgggtagcaccccatgtgacctcgacactgtt
tttctttcttgcacatttatcattgttagtatgtaatatttgcactgtatttcttactgt
tgtgtaactcaaacagcatgcccaaagtggaaatcaaaacagaagtaacagttggataaa
ataacctaggcaattgtttcatcctttaattgaggaaggcacaagaatttgaaaatacat
aggcctgtaagatgaaagagacattttcttcatcttttttcatcgagtttctcttcctcg
ccctgtctaagatcaagtaactataactggacatttttcctagctcctcccacttcacta
gtctatattcctgatcacctgtactatagaaactttcatctctaactttatttccataac
atttcaacaagaatttaaatatgtgtgtgtgtgtgtgtgcatacatataactagatatta
tcttacctggaaagtttttcatagagaactgacaaaaggaaagcaactctgatattaggt
tgaaagaaaaaagtaagtttttcaagcaggcttcatcccagggatgcaggaatgggtcag
tgtatggaaatccatcatcataatccactgcataaacaaacttaaagacaaaaaccacat
gatcatttcaatatatgctaaaaacaattgacaaaattcaacaccccttcatgttaaaag
tactagaaatattaggaattctaggcccatacctaaacatagtaaaagcaatattcagca
aaacagtagccaacatcaaactaaatggagagaaacttgaggcaatcccgctaaaatcag
ggactagacaaggctgcccactctctccctatctattcaatatactacttgtagttctgg
ctagagcaattaGACAACAAAAGGAGGTCAAAGG
Primer
(+)gtcataaggccagagaaattgg
(+)CCTTTGACCTCCTTTTGTTGTC


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