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Mouse element [ mm1868 ]


Position: chr13:15,260,131-15,265,825 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CGTTCTGATGATGTTGAGTGGTcttggtttctgttagtaagattcttaacgtgtgccttt
tgccatctggtaatctctggagttagttgttatagttgtctctggttagagcttgttcct
caggtgattatgttagcctctatcagcagacctggaagactagctctctcctgagtttca
gtggtcagaacactctctgcaggcaagctctcctcttgcagagaaggtgcccagggatct
ggcattcgaacctgcttcctggcagaacttgtgttccactcaccagaggttctaagatcg
cttagagactcctctggggtccttaggggtgttcgttgactccgcgcccaaggtgaccca
gtgctggagccaaccggaagggacttgccgactaaaatacttttatctagcctttcactc
taagatggtgcctatgttaatgctaatcttgtattatgtacacaacagaaagttggaatt
ttttttatccagtcagtcagcctgtgtctgttgactggtaaattgagacaattaacattt
aaagtttttagtgaaaagtctgtgttaatattggtccttgtgttgctgattttcagtgtt
attatttgtgtcctctaaactttgtgttttagtaagtatagcatcacatctctttccagt
ctttagctttgtttattcctcaccgcagcctgaaatattacttactgtgttcttttacat
ttagtttgttgcatttaattttttttaggctgttgcactgtgaatagtttttatctttct
ttcagcaattgaaactaaccagacccatgcatgggtcatgcagagccaccaccaaaatga
ctagataatcttgaaacgatttagccaaattcagaaaatgacaaattattttcaagaagt
taaaaaaataaaacaaaacaaataataatttttttaaaaaccctcttaatgtattttagt
tactattttgtcacccttctttctacaagccaggaaaacagaatcattgttttagcaaaa
aggagagttcacaagctatatcattaatgatagaattcaatatttgaatgtggcaaagca
tacaattacaaaataagatgtagttaaattttggttacaaatttcatgcatattcaaaat
agttcaatgaaaggatcacttattaagatcacaagaagagatatataggaagacaacata
gctggaggacagtgatagaatgatacatagtcatagctagaaattataatggaaacaagt
ctggatattagagctcattttgacatccctaaattctcttgactatatgatattctggga
gcttcagggctcattgcaaataccttaatcaccctcatcctcctagctgaagtcatagtt
acaatgcctcctcccctctgtttgcagtaaagaactctgctggctactgataaacctata
gaatagctgttctgggttcacattttgttctcttccagggaacaaattttactgccagtt
gggaaggattcttgagtgacactgactcatccataagagaatggaagaaaagtatttata
ggtacccagacttaagacttaaaatctagtgaacagccatggacacatggtttcagttgc
ttgatgaacatgtaaggtaatagttctaattaaaccgactgaacaagatggctacataca
gtactttgtatttcatttccaacaaatgtttaatgaatattttatgtgcaaaataggttc
aatgtcaatacatgtcattaaaaaacagatcacattgctgacaattattctcacagagac
aatgtcccttgttttttttttgtgaggaaaggagctggtcatatagatctgtgtatatat
tttaagcacatctttccccctaaacacagcaatggaagacaatgacagaatctgttcaaa
atccataaatgatgatggtcctttcatttttgttactatttccatagattttggaaaaac
aaacaacaaagaaacaaaaaatggacatcttgttttgggcaacggggtatgtttgctaaa
ctacgaatctagcataaagctactgaaagagaaaaatgtcctccatcttgggagtgccaa
ataccagatttacagaagtgaattctgctggctcttcacatggccaactggctgcctcaa
tgtcacttggccttggctctctactcagaggttttattttctgccaccaaaatacatgtt
atagatttgaaagaaataacatttactaagattgtgtcacactatacccaatagttcctc
atttaaatactttcatacacatttccccattcatacctcacagactggaaggagaatgtt
tacgagtatcttgagaaattgaaattaaagaggtaatcttcaaaatctagctggttgaac
tagagttctaaggttttgttgttgttgttgttcttgttcttgttcttgttcttgtttttg
ttcttgtttttgtcttgtcttgttttgtttgttttgtttgcctccaatatgggaccttta
aattaacactatgtatggtgtttgcagctatgacaccacatatgtatataagcctacaac
taggctaaggcaaccataggcaggatgccagccttgacctagcaaaagcttatctcaaaa
taaaactctttaaagcctgatgataatgcctagtttgtatagcactctcttagtgtacat
aaggctttgagttcaatacacaattctgtagtacggatgactgtggacagaatatactat
gttcatgccttcaaagtggagctggcatcatacagttcagaacaatgccctgaaagttgg
gggctaggagaaattacaattactttgtggatggggagcatgacaagggcccataacaac
ctgagaatagggtcttccccatcctggcccaccacagtgacagccttctgccctactgcc
tttgcttgacccggcctgttgcccacaatacttcagtcattaatgctcatctgttcagac
cccaaataatgtgtggctcctagaatatgtccgagaaatatgaacaagaatgtagttttc
ttccatttcacttgctgtgtctcaatgtctacttggaaaaataacaccttctttgtactt
tagtgaagggaaaatatcataaaaattcttagtcttagaaaggaaaaaataacttacaga
gtatgagttgacttctttccagtttttaagaatttttcaacttagtttttgctcacacct
gtctttagaacttgtcttaggaacatgcagggatctgtctgtcttttgctcacctctaac
atcagaagtaaggttctttcaaagtctgttaatgttcaaaatgacaggaactgtaaatga
caacagggtgaatcagcaaggtcattaagaaatgaattgttgagaaatatgtccacataa
atgaggaatgcatccagttaggtatgacacatacctgtaatccaggacttgagagcaaga
agccagagcctcaaagcatgttcagctacagaggactttgaggttaacttgggataaaag
acatagtcaaaaaagtgaaaaacaagtagaagcatataatagaaatgaagaatccagttt
aatattaacaatgtgtaaggttagggaaataattacatttctgggttcaacaagacattt
taggccagtgtcaataattattaagaccaaatagagacgacacagaaaaataccctctaa
gtgaatgataaaaagctaatgaggtttatactgagcaagaaatttcaagtctaatccaga
gactgccccacccagggatccatcccataatcagccaccaaacccagacactattgcata
tgccagcaagattttgctgaagggaccctgatatagatatcttgtatgagcctatgccag
tgccttgcaaatacagaagtggatgctcacagtcatctattaggtggaacacagggcccc
caatggaggagctagagagaaagcactcaaggagctgaaggggtcggcaaccctataggt
ggaacaacagtatgagctagccagtacccccagagcttgtgtctctagctgcatatgtag
cagaagatggcctaatctgccatcattgggaagagaggcaccttggtcttgcaaacttta
tatgccccagtacaggggaacaccatggccaggaggcgggagtgtgtgggttggggagca
ggacatgggggagggtataggggactttcgagatagcatttgaaatgtaaatgaagaaaa
tatctaataaaaataataaaatgataataataaaagaaatttcaagtctaataatgtcaa
tattactgcttaataacaaacaactaatttggcctatgtagtaaaagataaagtctgagg
atgacagaaaaataggatgggagaactctaacattcttcactgcctctgtactctatgcg
tttagtttttcaggttacaatagtgaggtggcagaacaagagtcacctcatttactctcc
tctacagaatctcatagtgacaatctatagaaactcatagtgatgatctgcagacaaaga
tgctaacctgacaccgaaaattcaaaactgaggcagaaatatcccacgaaccacagaaat
aagagccatgattgagtgataagagctgcctgctctgacgtgtcacccatctccttgtcg
gcacacttccagacagacttcaagcagccattgtttctacagagggaagtacgcagtaaa
ggagaacatttggcttctatatgatttgggggaaatagagccttctccttgtggtatact
gtgagtagcaaaagagatggcagttttgtcatcaactttctgctctgtgccaaatacaca
agataaatcaattcaaagaggataaagtgttctcttaactgaaaggtgcagaaattttat
tccgtaatcctttgcttctgttgttgtggtgaggtagaacgttataatgcgtaaggtgta
gtagagcagagctgttcccttttgtgggtatgttttgcatgcatgtgcttgctagaatgt
aaaaagagatgggtaatgagcatgcctatgcctcctgctaaggtacaccatgctcactga
ctcaactgcctttcactatgctctcctcgttctctgaaaagattccaccgcctcctagca
gctcatagtagtcagaaagaaaaaaaaagaaaagactgactagggactgttagaattgtg
gcaagaagcacagcaacagaaagtagatcttattggtgctctagtcagcagaaaaaacaa
aaaacaaaaaaaaacaaacaaacaacaacaacaacaaaaaacattgtatggtctctctcc
tctaaggctcctagctctaaatctttacatatgagtatggaatatggagaaacttcagaa
acaagaagagtaaaagtgggtcattgtttggaaggagaccatagaagaggaatggcaggc
tacatgtgatctcaaggggaaaatgggaaaaccaaggatcgttagttgtgtaggagcagg
gagaagaagaagaagaagaagaacaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaagaagaagaagaagaagaagaagaagaagaagaagaaggaggaggaggaggag
gaggaggaggaggaggagggaggagtataatagCAGGAAGGATGTACAAAAAGGC
Primer
(+)CGTTCTGATGATGTTGAGTGGT
(+)gcctttttgtacatccttcctg


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