Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1866 ]


Position: chr13:15,250,271-15,255,605 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCTCCACAATTCCAAAGTTTTCaactgtcaaatgaagcaaaagcaataaagaggtaccag
gagtaatttctgtattcattatcacacagctgcaataaagataaagaggtgaaaacatac
acagatattcacaattttgtatttgttttcttacaaatgatttggtgcatatatcttaga
ccctaaatctgatagatctgtgaaaatagttggagaagaataattaacaatgtgagagca
gaatgtggacatgttttattacatagaagaaaagcaatgaatatcttacaattttacatg
catatatcttgaggtaaagactaatttacgatatattaagatcagttgctataaaaggca
tacactcaaattcttatttaaaattttgaagactgaaaaatccaaaaattcagttttaag
tctttatttctaatatattttcacttttatttgaatacataacactttttttccataata
gctgcatggaaatgctttcaaataatctttcacactttgtggatatgccacagcagaagt
aattttaattaaaatcatatgaactagaaggagagctaaatatattagccatgtgtataa
attatacaactttgcaaatgctatgttaaaggctactggaaaaagtaccaatttttacag
tttggaatgtttcccccaccccaaggcctatgctgttcggaagtgctggaaccttaagaa
atgggcctaacagaaggaaattggggccttaaggatgtcccttagaagctccacactgac
ctgtctagcagtcactctcttcttcctgactactaagagtgaacaagcttctcctctgcc
tgagctccccatggtaagcgttttcctatcacagacccaaagcaagcgggccaagcagcc
aaccagtgaactaaaatcttaaaactggttgtcaagataaacattttatgtttatcagtt
tatttcacaggcatatattgaaatgagagaaacactaacatgccaagcatcacattttac
aattgatagttttccccttaaatcattgaagatacaactgaaatttgaggttataataat
acccaagtgtatacacatacccaaacacatttagaaacaatattacctgtataatttcta
cagcattgaaaacatcactaacaataaaagaattgcctgaaatccttaataacagattcc
cgctactgccctgtggaacttgctgctgtggggcatcttcttggccatacctctcgtttg
tttactcaccactttcattagcttctcctcagcaatgagtatgtttggttcaccctagtg
ccaccatcacatatacaatagctgctggataagtattcaatatagtcatttgactggtcg
atcagcagcattacaggactatgaggaacctgtacttgcagtacactgtacctggcctag
ctggatactaggaaaagtcccaggaaatttatagttaacaaaaatatcagactaaacaaa
atttggtttttttaatgtgccttatatgttaatatcctaccatagacagaaatatatttg
ggtgatgtatcttaagagccaagacttagcatgtttgtttgtcactaatgaattgaccac
agccttttagtgtattaagtccagtcaacttattttacttaatttattatgagctacatt
tcttgattttttttcctctctcacaacatagtatctttacaatataaacagttcctgctc
tgaatttgtgaaatgttaatagtgtcttggttaaaatgcaaatcactatcacaagaatta
taattttaaaaaatcagttaagaaattagcagtgtcaatgtatgataagacaagaatctc
tcaaaattacctatgttgttggggagcaagactcaatatggtaacctgttgatgggctgg
tacccaagtgctgcggaccagcctcagtcagtcccacctcaatccttgggaaattagggt
tctggacaggtgggcaaggagttggtgatgaaaagggtgacaaacagacacggacacaag
ggagtggtgtatctggatgtaatttgtctcaaagtgagcaccagtcttataagtgacttt
tacacaaaacagaggcatgcatacaaaaagctaacaggaaccaactgggataaaaatcaa
tgttaattgggatcaaaagcagccccacctaaggtcagcttaatcttagaagccggggtc
aagggcttcatgcccttgccatagctccaattctagtctattgtatagtccaccttccct
gtaggccagtgtaattcagctatctatagttctaagtatttactctatttccttcttaga
ccacaaccttccttcttcctagatcattgtaaattcttgcatatgggagtaactcctcta
ttattctaagtgatagtgtggggggactttctactaataagtaatgtagtctgccatata
taactataataagaattctaaacttactttgctaagcttgtcctgagatttctaactcta
tgtagtagatagtaatgcctgatttctttcactatctctctcacaatactagaggcaatt
ctgaatctcactgaataggcaacattcttattgaattccaagcgtagggtcagctcaagg
actacctagggcattggtgaaggccaggaaacaaagttagattttgcttaggtatttggc
aagtcattgcttggagacacctataataaaacaataatgagggaaagcacatagatccat
tcaccaactaaagcaaggacattattggagcattcgttatacaagatgccacggttccag
gagagtaagtttctgtgaccttttcacctcgggactgcatccaggtttctaggcctgtca
cacaagtcactactggagtggatgtagcacccaagatgtccaggtgcccaggaaaaatcc
tccccagttaattttttctcaaaatcttgatcctccatatctataggctctgatccacaa
gtctttcttagcatctccctacataactgtcatttgtgcttagacatttgatgcccaagc
caatactgcaaatcctgtatcctagtcactgtatctaaaggatcagacagcaaaggaacc
agatcctttctctgagacagagccatgagcatctaggccagtggttctcaaacttcctaa
tcctgccacactttaatacagttcttcatatgatgacctccaacaataaaattatgttgt
tgctaattcataattctaattttgctactgttatgtatcataatgtaaatatctgatagg
ctattttgaaggagaaccccctcaaaggggttatgacccacaggttaaggaccactaatt
taggcttagatacttacaaatggcatctatatgtctgctgctcctgtgcccacagtcccc
acctgcctcaatggactgtcgaatccctgctccaaaatgtgcttccacaggggcatgtca
cttgtcttcacattgatgtcagagttaactttagtatgtcaacttgaaatgcctgggaag
aggaaacttcaattaagagattgcctttttcagattggcatgtgtatatgcctataaggc
attttattagcctgttggtataggatggctcatcctactataggtagttttatattcacg
agtttgtttgtttgtttttcttcacagacttgaagttattgtcataaagtttcattggac
aagtgtttgctgtcaatttaatatttaagtgcatgtggtcatagagggtggatagtgtta
ctgtcatctcttctgatctataaggatttgtttgtatcccaggaaggaatccattgtaga
gaggcttctgtgtgtgctgagtagaacatgcattctttggagtttgagtgaaacattgtg
catataagtgggaagcccctttgatgcatagtaccattttgttctgatgtttctaagctt
atttttgtgcagatgggcaggctattggagaaaagggagtactgaaatcacctacaatca
ttgagctaatgttaatctgaatctttaaatccagtgtattttttatgaaattgagtacac
tagagttcggaccatataatacttgggatgtcttcttggttaactgctcccttgagtaga
aggagtctccttctttatctcttctgattaatattaatttgaagtctagtttgtcagcca
ttaggatagtgatgcatgcttgcttcctggtctcatttgactgaaatactttttctgttt
gttttgttttgttttgtttttaattttttaattaggtattttcctcatttacatttccag
tactatcccaaacatcccccataccttccccccactcctctacccaaccactcccacttc
ttggtcctggtgttcccatgtcctgaggcataaaatgtttgcacaaccaatgggcttctc
tttccactaatggccgactaggccatcttctgatacatatgcagctagagacatgagctc
ccagggttactgattagttcctattgttgttccacctacagggttgcagatccctttagc
tccttgggtactttctctatctcgtccattgggggtcctgtgatccacccaatagctgac
tgtgagcattcacttctgtgtttgctaggccctgacatagtctcacacgagacagctata
tcaaggtcctttcagcaaaatcttgcttgtgtatgcaatggtgtcagcttttgggggctg
attatgggatggatccctggatatggcagtctttagatggtccatccttttatctcagct
ccaaactttatctctgtaattccttccatgggtgttttgttcccaattgtaagaaggggc
aaagtatccacactttgctcttcattcttcttgagtttcatgtgttttgcaaactgtatc
ttatatcttgggtattctaagtttctgagctaaaatccacttatcagtgagtacacatca
tgtgagttcttttgtgattgggttacctcactcaggatgatgccctcttggtctatccat
ttgcctagaaatttcataaattcattctttttaatagctagtaatactcccattgtgtaa
atgtaccacattttctgaatccattcttctgttgagggacatctgggttaaatccagctt
ctggctattataaataaggctgctacgaacatagtagagcatgtgtctttcttaccagtt
ggaacatcttctggatatatgcccaggaaaggtattgcaggtcctccagtagtactatgt
ccaattttctgaggaaccatccgacagatttccAGAGTGGTTGTACAAGCTTGCA
Primer
(+)GCTCCACAATTCCAAAGTTTTC
(+)tgcaagcttgtacaaccactct


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.