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Mouse element [ mm1865 ]


Position: chr13:15,240,889-15,246,348 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCTCCAAAAATACAACCTCCAGatgctccaatctcctttcacagacacagatgcttctac
tggacttgttccttctgatctatccacagacagttccacagaacctggacaacaaggaaa
cagctaattctcctcagactagaccaacattcccatacctatttttctcagtttcctaga
gaaatgtcaccacatagccagaaggaagtagttaaagatcacaatgatcctattcctgct
tcaccatcacttctttctcattttttttcttttttaattaaaccaaacaggagaatgtta
gcatttgatcgaagctctgccccacagttacctgggaacagccaggtatgttgcacccca
cagttacctagcaatagccagatatgcatggcttactataaaaggtactgtttgttccct
cctctctctctagctgttgttcttgccttcctgctctgtcatctcaccctttcccccctc
tctcattccctcccccccccacatgctcatggccatggtctctacttctcttctcttctc
ttctcttctcttctcttctcttctcttctcttctcttcttcttcttcttcttcttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcctctctctctctctctctctct
ctctctctctctctctgcctctactaccctcgtaactcccctccccataccctaaataaa
ctctattctatagtataataccatgtggttggtccctagggggaagagatgcctcagcat
ggacaatggaggtatctccttccctcatacctgactatacttccaccaaaacatatttct
cctctcttttttataaacacatcactatgccctatatgatcggacatcttctttctgccc
caaacttctccgtctttatcagacacagaaattacaaaatctctacatatacatatgcca
ctacaaaaatacaaacagtatgaaatatcaaggtagtatctctcttcaaaatgtcaccag
tctaatagagctcttttctaatgataattacatatatgagcccaggacaaaaaatttaaa
agaacaataataaaaaagaattcaaggagtctaaagaagacacaaagaaacagcttaacg
aagttatggagaaagagcttaattacaataattataataagataataataataataacaa
gagattaaggagaataattttatccaagaaaacacaaacataaggctgatggaaattata
agaacaatccagaagttgagaacaaaaatcagtaaaaagataaaaacattgaaaagaact
caagctaaaatgaaatggaatttaaaaccccagtaatccaaccagaaaattcaaaggaaa
gccttacaggtagaatgaataaaggagaagataaaatatcaagagttgaatataatacat
aagaggaaaataaatgaaagtaaaataaaatcaaaaagataggcactgcactagagtgaa
agaatgtttaaaagaattaaaatcaaattggacaaggaagaaaacaagagttgctatcta
atatctgccagaatagttcaacctaaaactaatcagaaaagataaagaagattcttcatt
ctaataaaaaaaaagatgaccaagaaaacattatcataaacatatatgcatcaaaatata
ttgcacctaatttcataaaaatatactatttgagttaaagacacagatttggccatgtgt
gttggtatatgcatttaatcacaacaatcagagggcagactttaatgagcttgaggtcag
ccttttctacacagtgaattccaagacagccagggctacataaagaaaacctgtctcaga
aaacacacacaaataaatgaatgagtacatacataaatacacatattaacatcaactcat
aaatattagatgatttttaattcactattttctccagtagacagatcatcatagtagaaa
ataagcagataaacatcagaattaaacgatgtcctatatcaaatatactaaaaagatatc
tataggacattccatccaaacagcaaggaatatatatcctattcatcaacaaataatcta
atgggaaactaggaaaaaaggggagttatctaattagggaaaaaacaggaagatgaatac
aaaaaaggacagagaagactaaaacagcagtaaggtctaaaaaaaattattaggaattgt
aatattaattaacctaaaccttttacagaaattattaattaacctaattatttacctaag
aatccataatataaataaatctgtatatgtaaatatgcatacatagttcaaatgaaaatt
tcttaactgatctagtatcacctaacaacaacaacagaaacaacaagcataagaaaccct
ttcttaatgaggtacatttacacaatggagtactattcagctattaaaaagaatgaattt
atgaaattcctaggcaaatggatgtacctgaagagcatcatcctgagtgaggtaacccaa
tcacaaaagaactcacatgatatgtactcactgataagtggatattagcctagaaactta
gaatacccaagatacaagatacaatttgcaaaacacatgaaactcaagaatgaagaccaa
agtgtggacactttgccccttcttagaattgggaacaaaacacccatggaaggagttaca
gagacaaagtttggagctgagacaaaaggatggaccatctagagactgccatacctgggg
atccatcccataatcagcctccaaacgctgacaccattgcatacactagcaagattttgc
tgaaaggacccagatatagctgtcctttgtgaggctatgccggggcctagcaaacacaga
agtggatgctcacagtcagcttttggatggatcacagggcccccaatggagaaactagag
aaagtacccaaggagctaaaggggtctgcaaccctataggtggaacaacaatatgaacta
accagtaccccgccccagagctcgtgtctctagctgcatatgtatcagaagatggtctag
tcggccatcattggaaagagaggctccttggtcttgcaaactttatatgcctctcagtac
aggggaacaccagggccaagaagtgggagtgggtggggaggggagggggaagggtacagg
agacttttggtatagcattggaaatgtaaatgaagaaaatacctaataaaaataaagaag
agtttaaaaaaaaaacccaaaaccctttcttttgagttattggtcagtgttgtccaaaag
actgttaaaatattacattcttttgatattgcccttggttactctcttccaaccccaaga
aatgaaacctaagtccctaattgctgaagacactgtgcattttagacacagggcctagag
gaccttcagctaaagcttaccttaaagcttcctccctaaggattagctttaattgttaca
gaagattctgctcaagattccaaaggaatgaaacaaacaacagcccaatgtagctatgac
acatgagtgacaacaaagactagcatgccacaataacctaagcactgcaatactggcatg
tgtatcttggtgataaccaaccactcttatgtataaggtatgttcaacaagagggaaatt
ctgcttcatactgaaaaattagccagctgtctagcccacttcatactggaaaccagggtc
agtaaagtcatggatcttagaagaaagcttacagttgttactcttctaaaccatcatagt
tcctaaatacattttaaaatacattgtatttgtccttatacccacaggctagtatagttc
ttatccttcatcaagaaaacttctctgcaaatggactaagaccattacaaaaagctacaa
gtaatcaaaatacaagcatgtgagttcagtcccagctgatacatctacaacacaatcctg
tacccgctcaaggatcaatggaaaaggggctggaggaaattgtaaaaggcagagttttct
gtgaggttgtgtctcctaaaaatgtcagagaagcaacctacccctaagaaatctcatggc
ttcgtaaaataacctgaacaaatataacaaatgttaacatggaatggggaaggctcagaa
gatctgcaaccctaaacaaagaactgtaagcaactaaggaaggctgagagcagaagtagc
cttccccaggaaagaacacactagtcggctgccagtgccaaggtaacccctgaaaacatg
tgcatgcaagaaaaattatatggaataagcaggttataattatatatttaagaatacaca
gacatacatgcacatacacgtatgtaacagcaattaaagagggagggaaagagcatggat
gagagaagatgaggtagagatctgtgagaggttttggagggagaaaagtgaaggggagaa
agatacaactagtatcttaaaaaagtaaatacacatattaagaagaaaaaagatcaaatt
cttaactgagaaaaatatataaataactaatgggcacagttgaaagctttcaaaatcatg
gtaatcaaagaaaatacagaaatctgtcatagatgagaactgcctacatagaaatcattg
ctaaatacattgtgatattctggaacacaagattatagacagaaactaaggactcagtac
tggaggcatgtaccagcagttaaaagaacaaaactgattttgcagaagatctgaatcagt
ttcctgtgtcagttgcagcgcaatcgtctataacaccagctccagggctctgatgcctct
ggtccccatggacacacacactcatgtgtgtgcttacatgcgtgcgtacatatgtgtgct
cacacgtgcatgcacatgtctggactcacacaaacatgtaaataccaaaattgtttaaaa
ggaaacacaactaaggctttgggctggagaaatggcacagcattcacactgggtggctca
cacccacctgaatcttcatctgcatgatgcgtctggtacctgcatccatattgacatgct
cacacacaggcaccttcattcacaggcgcatgctctaacatacatacatataactgatgt
taaaacttttaagctaaggttatgaataaaatatggatttgggctaataatactttatcg
gtatttgttcattaaatggagtgaatatacaacaagagtaaaatatttataaatggagtg
aacatacaacaagagtaaaatatttatgagtaactgcacataggcacataaaagtttctg
tatctttacttttttggtaactataaactaccaatttcattagggaaatattcatatact
aacttagaagcaagaaaaggtcatttctatgggagagaaacaaagaggaaatctatgata
gttggcaagatcagaagatgaggggctaaatatggtgcCAGACCCAGACACAAGTCTGAG
Primer
(+)GCTCCAAAAATACAACCTCCAG
(+)ctcagacttgtgtctgggtctg


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