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Mouse element [ mm1864 ]


Position: chr13:15,217,449-15,222,159 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAGACTGAATGAAGGACCATCCagaaactgccccacctggggatccatcccataaacaac
caccaaaaccagacactactgtggatgccaacaagagtttgctgacaggaaactgatata
gctgtctcctgagaggctctaccagtgcctgtctaatacagaagtggatgctcacagcca
atcattagacgaagcacaaggtccccaatgaaggagctagagaaagtacctaaggaactc
agtgggtttgcagcaccttaggaggaacaacaatctgaactaaccagtaaccccagagct
ccctgagactaaaccaccaaagaaaacacacggtggtagaacctcttagagtggatgctc
acagactgagcacagggtccccagtgaaggacccaaggagctgaaggggtctgcagcccc
ataggaggaacaacaatatgaaataaccagtatctccagagctccctgggactaatccac
caaccaaagaagacataaggtgggactcatggttctagctgcatatgtaacagaggatag
cctatcagtaatcaatgggaggagagacccttggtcctgtgaaggctctatgccccagta
taggaaattgccagggccaggaaatgagagtgtgtgggttggtgagcatggggagggggg
aagggatagggtgttttcagaggggaaactaggaaagtggataacatttgaaatgtaaat
aaagaaaatatctaattttttaaaaagatgaaaaaagaaaaaaggaaactgcggcccttt
taagagagaccccatgaaatggttctgaccatttgaaacaactctatagacagctgaaag
aggataggcttactatactcaagtcaaagggccaatcaaagaggctccaccatccaaagg
gaaagaccaaaaagatgtatatgtgtcaactaaggaacctttaaagttaatcctagaaag
ggcctgatgatgctttattatggaagaagataggtttggtgcagtttgctgtgcttattc
ttgttaagtactgtgcttgtggcttgcttgtgttataagaggttatgaacgaaatccaga
actaaagcaatatttctagtatagaattcagcaaaggcagaaaacaaaaaactatcaaaa
accattctagacttaacacatcctatttcctgatgtggatccctgtttggctcaacttct
ggaatctactgtaattgttttcaagtacaatggagaaatatccataagttgctcaatatt
attttcctattagcatagtgattaatgaaagtcactactcttccttataaaacttgatgc
ctgccaagtcttatatcataaaaatgaaaaagatacctcaaaataaaagaagagatgatt
aacatcaaggacttgagtcagatcttaaagagaaaaactgtattaaaatatttggactat
tgtatagagtgggacaaattcacggtacatgtgctcagcaaaagctactgctatgcttgg
gaggcaagacgttccaggcctaggtaatatcctttccccttagaagggtcacagactcac
tggagtaacttatatgctagtctagtttcaagatgaagactcagaaagaaatgtgacttg
acagagtctgttgctcctgtttttagttgtacaggctaggcaatcttctcctttctcagt
aggagaatgaattagccttcatatctcacataacatgaaggtggaacctcagtggaggat
cttgaagcctgtactcatttcctgaatatacaaagcaaacagaggagcaaaatagcaata
actcttcactcagtgtctcctgtggtggtactgtgggtgagaacctatattcatgtctac
ctcccagccgatataagggctgtatggtaggtcaactgaccctttaccctggcctttaat
tctcttctttttagttaaagtaattccagagttaacaagtcaatcacacttgattctaca
ctaaagtagggagatggatatgttaggcttagtagaagatattgcacttttcccctaata
gcacagctcctaatgggtcaacagtcaaggcccttcaaggagctttgccagtgaattatc
aaaagtttaaaaatggatgattcatttacagactgactggaaggatggtttggcagatag
aagggggtgatggctgcaattctaatctccctaaacactgtagtaggaatttagttgaat
gcagcgttattccttgtctagtggagctagttcattaaaataataatcaaaagtaacaac
aacaacaacccctgtacctgactgatgctgtcatacagtgccaaatctaagtaacctcta
gaggtaaaataagatttgaggaataatgaaactgaggagttgatgtgcatctctaacact
ataagcctttgaagtttagacactgcaacactgactacacaaaacagaaaataccaataa
acttcagtatcctactatattggattatatattgtttatcacatatctgcagccaagatg
tggtaatttgggtacttctgtagactcaagcttagtttttgtcatggtagagacatgtga
acttagaacttggccattcttataatcttttggaatgaaattccttctgaatggagcaat
atattaattttaaaaacatttcttgaacgttaataaaagtaaggcacttttttgtgctaa
tgtactttcataatctttacaccataactgtagaaaatcagataactaatctccgaagtt
tcacacatcttcaaatcccttgattatttgtggacctcttgccacctgcctgtatgtcaa
actgtcacatagtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtaagcattagaaaataataattaaaagcaatctgaggagcacagttgtcaggggtcat
caggtccttttcgttcttggaaaatggcttgaattatacctgtggtagctgcagctatag
ctcagagttctcgggggtaaggataaaattatatgaaaaggtacagtctttataaaaagt
acccttaatgagacatttaaaaactgagacattaaaaaaaaaagtactaattcaaagaac
ttcactagcctatgctgttggtttgggtacttagaaaaagttgatatgtaacaatagata
taacatagtgtgatataaacacaacatttaaagtcattctttttgagacctcacaattta
ctaaacacaattataaattcaccgtgtggataatttctggtttagccttgtgacgtgcat
tttactatcacatctctcctacagtaggtatgacagaagaacttgactcaactatagctc
ccacttgtccaaccaaacaagaatgtgggtattgtcaaagttgtgtattatagctgataa
aagtgaataattgcatagcattaaatgaggctaattatgaaagatagtaggtgggcctga
ttcaatctgctttaaaaccttcaaagcaacattggaccttcccagaagaagaaagaaaag
gagaagaaggaggggagggaagcaagggagatcttagttcgaacaacaggtttagcatat
ttgtcagcacccccaccctccctttgacagcctacgcctaagaccagcagccagtcctct
ttctgacctcttcctattctgttgttgtgtaactgtgtaggagctttgtttgttttttgt
ttgtttctggtcatgatgaaaattaaatgtaggaccttgtgcatacaactagacaaataa
gtactctatcactgagctgcatttgtagcccttttaaaaatatgttttgagaaagacttt
gtgtattgtctaccttggccttgaattaactttgtagtctaggcaagactttaacctcaa
taatcctaattcagtctcttctgtgtctatgataactagtctatcagatgggaagggaca
gggagggaaactgaaaggatctgggggcggggagccataatcaaagtagattgtattaaa
aatcgattgtcaataaaagaaagtaaaaaggaaagtgggaaagggagaaagggatacttt
aggaatttttcatgtcacatatcccaaaatgaactgacagcttccctttagagctactct
catgcctagacctcttccgactataaaacacattcctcctagctaaagtattcttactca
ttttctaggttccacttgaacacctttcctcccagaaggatccttcctccaacacctgca
agagtcagtgagtgttcctagctgttccctcaaccccatgctggttatgcttcatatcaa
ttactacaaccatgctaagattgtctcataaagatcagcttacaagtaatgttaagcccc
acacttgttttcttcattgtacatcctcccatgcctaggccagtcttttgttcgtggcaa
gttattctgtttactggacagtgaaggagtttggacacaatgaaatatgaaatttattta
tcattgagatgagacatttgttgggagttttggaggggaaagggaagatggcatggcatg
gaatggatgacttttatggaatgctgacccaagcaggggagcttgtaagattttccatat
gtattctctgtttattcctgcctggaacctttagattatctatttcaactgcccatgcac
aagacaagaGAGAAAAGTTCCAGGTGGTGAC
Primer
(+)gagactgaatgaaggaccatcc
(+)GTCACCACCTGGAACTTTTCTC


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