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Mouse element [ mm1863 ]


Position: chr13:15,202,610-15,208,247 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TACCAAGGGAAAAGGCAAGTAAcagtcttacccagctataaagcttacagactacaatgt
gcagcatgacaagatattccccagggtggagtagtggcgcttacatttgtggggtaatca
ataactatctaattggacttgaagccttctcaataggagggaactcatgcctgacactat
aaacctagtgactataaggcaggtgagagcctactacttttactttcctaagcaggtata
atttccaattgtattctaaatacttattcttatatccacagataagtttatcacctctaa
ggacctcctttttgcagtggacagggaccatcacagaaagctacaactggttaaaatgaa
gagtgtaactgacagtggcatgttggaatgcctaaccccaatgaacacatcttatataca
agccctatacctaaggctcagggaacattgtagaagagagtgaaaaaaagtgttttaaga
gccagagtatgaggacttgtgctatgatagtgccttctagtgttatgtcaacttgacaca
agctggagttataaggaagagagaacctcaattgagaaatgcctcaactaaggttatagg
caggcctataggatactttcttagttattattgtgggagggctcagcccacagtgagtgg
gaccaatcctgggctggtggtcctgggttctatcagaaagcaggctggacaagtcagaga
acaagcagcacccttccaaaacctctacagctcctgccttcaagctcttgccctgtctga
gttcctgtcccgacttccttcaatgataaagagtgatatgaaaatgcaagataaataaac
gcttttctcaccaacttgttttttggtcatggtgtttcattgtggcattagaaatcctaa
ctaagatagatactgagcagtattcatgaaatcttagtaggtgataacacccattggcat
tccaatgtaaatggcagaattttcacaaggcttcacccctagatgaagttactgacaaat
aatcatgctaaaaagagagagagaataaattttcttcagtgatgagtgcccccataagtt
gtctaattacaaatggtcattcctaaacatatgggaaaaactaatgaacccatcaggtga
cttttacatttacatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtaattaatga
agatgggtcatgaatatgagagggaatgagagaaatatgggaggaattagattgggaaga
gatttaattgaaaatgaagtaaatagagtactcatatatgaacttaccaaaatgatgtaa
aaaggactcttatcaatattttttaaaggatagggaaagataagaaaatgatatctagag
ttatgatctttgtctcacatctttatcagttaaaatgtattctaatcttacttcccattt
cagaagctggaagcacagagaacaaagagatctattgttactctactgactctgccagag
agttcaaactccactttgtctgcctggagccatatgtagaaaacttccaatttcctgatt
tttttttttttgagaagctggtgttttatccatgttgttgattttctcatccatttttct
ttctgctgttgactttcctctgcaatcctttacttaatatatcaacttccatatatcctc
tttcagaatccagatcagtttatagtcaaagtctgaacatttcatgtagcatttttacct
actttggtacctttgagtttagcagttaaagaattatatttgcagaagtcacactgcctt
ggctttttcattttctgttgcttctgcatagcaatttgtataccttctgggtttgatatc
tcttacacttttacttatagactgtattggttaattttctgtctctgtgataaaatacca
tgaccagaatcagctcctggaagagtttattttcagattacagttccataggtgtgagtc
catcacagcaggaaagcacaacagcaagcagagaacatggaagctggaggagtgagcaga
gagttcacattatcagccacaagcatgaaacaagcagagagagcaaagtggaggtgacac
acactttccatctcaaagcctgctcccaacaatgtacttcctccataaaagctgcatcac
ataaacctctctgaaaggtgtcaccaaacagggaccaaagagagaggactcttcttgaaa
ctactacagggatcttcttattgaacagtctactccacaaggctcaaacaccagtagtaa
ttagaaaaaaaagaatacaaattcttataatagaaccaaagtgtgtaaaggacagaaaga
ctctgacaattggctaaggtacagtcatgcatcaccaggaactacaaaaacgacaataaa
actactccaaaatgtgctatgaatctaataggtatttgaggcaagggtgaaaatggttag
tggatgagatataggaagaatgcattgaaggaggtaaaataaagaagaatctaggttaaa
gaaataaaggtgccaggcatggtggcgcacgcctttaatcccagcactcgggaggcagag
gcaggcagatttctgagttcgaggccagcctggtctacaaagttccaggacagccagtgc
tatacagagaaaccctgtctcgaaaaaccaaaaaaaaaaagagagagagagagagagaga
gagagagagagagagagagagagaaagaaaggtggcagagcaggaggaggaggaggaaga
ggaggaggaaaatgttcaatgaaaggggaaagagaaagtcagaaaaagtaaaaaggaaat
tgaaataaatgtaagactacctaatactataaaaacatccaaagagaaatttgggtaact
atgtgggggataaataaaaaagtaatttttaaatctggatagagtaaggtgaaagtacta
ctcagggtagaacgggagcgaaggaaacacaagaggcaaaagggaaattttaagattatg
caaaaagaaaatcaaaattcagtgaacgaaaacagacaaaaacgcacatctatctttatt
cttgcaagagacagtgtcgttaaatgaactcattaagtctggcgaggattcagacagtag
tggctgtaagtcagtgcccagaagaaccagtgggtgcatggagactgcccaggactagat
tcacactcggcagtgcagctcaggatcggaacaaatttaagcagcatgtgggaattggct
aaagtccatggcagctaccaggcaaccacttaggattcttttccccacatgcaatcactg
tggagtaccaacgttgcagctgaggccaagagctcatgctcattccccacccccaccccc
acccccaacaccaacccagactgaagggagcatgaagggcgaactgataattacatcctt
aaatcatgcagatgcacagaaactcactactatgctattcattctaaattctatagggca
acaccatagatttgcttctatgggtctgaattcgaatctcacacagcacttaccccacca
tggcagtttgttacatgaaacatcacagggaggaaaggaactcaaagcccaaccatcagg
taagacgtacagactgatgtgggttgttttaacccgaatggactcatattatagtttgcc
atgtttatatttgttttgttaatctgtaatttattttatatttcgatgttcttaggatga
ttgcatcgacttgtatattgctcagctgggtatcaattaatctgtaccacatagaatcta
tatggtgttcctttatttctaccctctgtactaattctctcttccttttctcctgtaaag
tatacttcttaactataatcttccataggtttaacagctttgggaatcagtagaccctta
cagtatccaaaatttttcctcccaactacctttccaaacgctattttaaaaaacaaaaca
aaaaacaacaacaaaaaacttggtctaatactaaactgtagccttacctccctacttttt
aatcgtagtcaaagaaatcccagtatataccacactatcattgttgtttatccttcaagg
ctttaggaagtgaaaaggaacacggttgttgactggcaagtgagacattaatacagtgac
catatccagcagttttagttgctcccacagttaatactctactctggtagtagtctaaga
ggtcacatcagaaactatgactttctagactaagaatctaaactataaactatacacctc
aaatctatgacaatttagcctgacttgaacattggtaatccctcaacttaaaaaaaaaaa
aaagcctaaaagaatttttttttaatccaagaaattgattgtgcattgtgggacataaaa
ctgccagaaggcttggtaaggtagagcagtatgtgacccggagactcagtgagcatacac
ctgaggcttaggtaactctcagctccctgccagactcttgactcggaacatgtgccatgg
tcctcacataaagaaacatgtcctatggttcacataggtacaaaacagagctctccttgc
taatgaggtacctagaggcctggagggcttagccaataagcttcccttcccaggcattcc
tctctgcaaaagatacttaatcttaggcccacccttagagaggcccattggtcttgcaaa
ctttatatgccccaatacaggggaacactagggccaaaaagtgggagtgggtgggtaggg
gagtcggggtggggggagggtgtgggggacttttgggatagcattggaaatataaatgaa
gaaaatgcctaattaaaaaaaaaaagaagtgggtatggttttatgcatccattttctgct
gtgacaataaactgtttagaaccatggactgtctcttttcatcaagatatgttttgggga
accatgaagaaggcatctgcttacagagccacatcttaatctcctttagaaggtctctct
gtgtttccagccacaaccgccatcaagcctgcctctaccaatcagcccatgggacaagcc
agagttcccctccccaccacaccccaggggatccctgagccagttttagctttttggacc
tcttagattgtgctttcccaccccctgagaggtatctaggcacttccctacagctccgca
tccacacctgtggcaaggtggggtaagcacagtcagacaccccacattcagcgaaccaga
cagggaccagcagtgcattattaatattttataacaaaaaaagaaagactccccaaaaaa
tgaaaggaagagagagagagagagagagagagagagagagagagagagaggaaggaagga
aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaaacctaatata
cagtgatggtctccactgagagtaaattagatgagatactgctagacaaagatctcaaca
acaaatatatcaaagaaattataaattcctggatgaatctcaaaaaatttaataaaataa
aggcaatatagagactagagagatgatgcagcagttattagtaactggggcttgtggtgg
tttgaacatgcttggcccagggagtagcactatttgGAGGTATGGCCTTGTTGGAATA
Primer
(+)TACCAAGGGAAAAGGCAAGTAA
(+)tattccaacaaggccatacctc


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