Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1860 ]


Position: chr13:15,179,734-15,184,526 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TATCTTTTCAATCCCACCCAACcacaccacaggaatattctagcatataattctttaatg
agcaattcatagccaaactacagcacacattactccacaggtttcttccactttccacat
tacaaaagacaactttcctaagacctaaaattttaatacattttcttatgtattaaaatt
tacaacagagtgcaactagaaaataatgagactttctatgggggggggatgggactattt
tttatttttgatctccacagttctttagcttgtaagtattcttaaatataaaaaagaata
agctatatcagtaagtaagttaattctatatccagcaggaaaaaagtgtttcttctggct
ttgctctctcagatcttgctcagtcatttttctctgatcccatttatttactcccatttc
cttggagtccttaggattcgatcatttgctaatttctggagaaagcatttctttagacta
ttatagagtatcttctcttagaccatatttgcattttgaaaggcattccagtgtcttaat
cagaatattgaacaatattttaagaatcctgtcaaaactttgtgagacattaaattttaa
aggacgtcacctacactgagtgctattctaatttatagttcttttttaaaaactcggaaa
attttaacttatgctggcaaaaaggattcacaatttaaattctagatacaattgatgaga
cctaataagggaaggatagattggatagagtgttcacaactgacaactgtccagattttt
taatttttagcattatcattggtttgtgcttttaatatttttaaatgagtctttgccata
ggaaattctattagaagttgctatacattatttctttgattctctgggatttgtaaaact
ttaatgagaaacatggtatatctgacatacttacaaagaaatgatagaagatttagttac
tcattgtgttatttcattttctcatggctgtgaccagattacttcacaaaaaagaaactt
aagagtggaagtgttgtgtggtggtttgaataggtagggccccatagattcatagactca
tgtatttgaatgcttggcccatggggagtggcattattagaaggcacagcatagttggag
taggtgtggccttactggaggaagtatgtcacagtgggggtgggctttgagattctatgc
tcaagcacttcccagtgtggaacacagttcccttctgctgcctatggattaagatgtaga
actcctagcttcttctccagcaccatatctgcctgcatattgccatgctttctgccatga
tgataatggactaaatatctgaactgtaagccatccccagtgaaatgtttgcctttataa
gagttgccttggtcgaagtatctcttcacagcaatgaaactctaactaaaacaggttgct
ttgggcttatgactttagaaggaataacattcatcatggcagggaagatatggagaaaag
agcatagggcatcaggttacagttaagaaaaagagagatggtcagaattagaaacaaact
gaaatatcattctctttcagggagtgacttccttcagcaggttcatagccatccaaaggg
ttagtgatgaactgaaggaggatagctcacatttaaacaatagctgtcaccataaagaaa
ctagaaacctcattctttgttgatcagagaagtggcacacagagtggctgaggacagcaa
acactagggagagctgaactatttgagagcaggcttactttatttttacttggacagcat
ccctcgttctacaactgattagctcattttgtttacaaaatcttgagcctctttttaagg
caacagaggtttacttcatttcttagcaatggggaagatcacagatggtatccctaatgt
atcatttaaccaccaagaagcagatgtgtcctccagtctgagacttcaaccgcaatagga
tattattttaaagaaggaaacagagtctgttttaccacaattaaaacagagcaagctatt
tactttccaaagatgaccatattttcctaaacaaatgtagattattgcctatttgattta
tgccttagagtaacttactgcctgaacgtactcactggaagaatctggcattttcatatt
aaaacacacagtaattttggttagagttggacatttctttaatctaatcatctttcattt
tatatcaacaatattgattgatactatatatttaattttaaaagtcccatttcctaactt
cccactaaattatctgctaaagggccaggaaaaacataaacagtcacataaaacagagaa
aaccagaacttataaacactcactgcccaaactggaaatttcactaattacaaggctgac
ataagtggcttaaagtaagggaaaatatattaggagactatctaaggtcagcatgctatg
gcatcatgataagaagatgagtgtgctctcctatgtgcaacccacgggcatgagagaagg
agaactagctccagctgaagactcttaagggaaagcaaagtctgtgcagcaccagcgaca
gattttcaatgagaagaatgtttggcagatatccactcaataaagtagttaacacatgaa
cacagtgactatccattcctaaaaagtagacagtttgcagatacagagaagttttgctct
tgttctatcataaaatcaacccaaggacagagtatctcattcatacattcatatacataa
tcatataacacacatatgatacacacatacatatttatatgtatataactcataaggttc
ctgggaatatccctgggcatgcatccaagggcagaagtccatgagcagataaagaaaatg
ttgtgtacacacacaaattagtcttattctctagtaagggagaatatgtgacaatggcag
aatttgcgccaagagcttcagcgagattccagggtaaagcacatgcctttgctgatcatg
tgtggcagctcgcttttttagcagccacttcttttaattcagatgagctgcagccctgag
agaagcagaccagtgcattttcctctatcttcaaagagccttcttcccatttcacgcata
ctatgatgatactatatcatcaatatgatattcacagaagctaagtgtctctgagctgcc
ttgtatatcaaagtgcactttccttaccccagcgcctaatgtttctgacttatgggacag
aaagggagaaaaaaaatctgttctgttctaagacattgatctataggaaatggacttgca
tatgtcacaatgtaccactctccctgacttctctgccctagctcttcttcctggcttccc
ttagagcatattgctgcttgacattttgaagcagactgtggcttgatgtttccttgttcc
ttgataggacaagcaccagacagtactctgtctgtggcaaacaaagtccacccttacaac
agtggacatctatgtaaccaattatctaaacgcagggctaagcaaatcagaatatcagac
taagactccagttatcctcattgttcttaactaaaggagttataccagctactgaccaaa
agtagaaaaaaataaataaaacaaaaaataaacaaaaaccttgtgttccacaaaagaaaa
caggagaaaaaggaagccaattggtgactgggcaaataatttcaaaatgagagttccagt
aggcacagctatatcatcttagccatttgaaatagccatttgaaaactgtagtcttctta
ctcaaaattcatcctcacagcagcatttcttcttcaataatctgcaatattttcaatggc
agggaatctgaagacagggggacaatgaggatggcagagtaaaaaacaaagacaaaacca
gaaacaaatgaactgagtcccagtcatgaaatcctacctacagatgttttatcatgaaaa
aaatagttgcttttggattaagctactggaaattcattttcttattttctattacttgta
agaaatgacttttctacttgctaaatttctcaatatttgcccattaattgttaacccaac
taggctgttgttttaaaatcctaattaattcccaagcccagaggcagaccttcagatgcc
tcggttttttaatcccacctaggaatacttctaaaaattcgactgtcaagactgaaaccc
cttcaaaaataaaaagttaaaaaactagaggaaaggaggaaaaggagagaagaggggaag
ggaagaggaggtaagaggaattaattacattatttttaggagtgtggatggaagtggaga
tcatcacattaagcaaaataaaccagattcagaaagataatcatacattttctgtatttc
agaaaataggttgaaaaaaagtataagaatgtggaagggtgctttttcaagaaaaggaag
gaaatcagtagataaaaaagaatgttttatatatatatattgcttgtgcaaatatattaa
tttttaatttgtgggactaatagtgatatatatacatatatatatatatatatatatatg
aaatattcattactttgagtttaatcatcaatatgaaatagagccttaaaaatcctaaga
attcttgttccagaaaaccatgattgattctaaaaaaaaaaaaaaaggtttgcttatatc
tgtacaaggtagtatggattttgaaaccaagacttgaaaaaataaagaaatgaatgactg
ccaatttttaagtaaaaagaaggggttgacaGCTAAAGAAGCTGAGTGGCACT
Primer
(+)TATCTTTTCAATCCCACCCAAC
(+)AGTGCCACTCAGCTTCTTTAGC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.