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Mouse element [ mm1857 ]


Position: chr13:15,153,846-15,158,519 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ATCAGGTATGAGGGTGAGGAGAcaggagagaagccctgagggctaacagaatgaatggaa
atatgtaacctgtgggttgggtggtgggtatactctctagaaagtaccagaaacctggga
ggtgagagactctcaggacttagtgggaggaaccttagatgaaatacccaatagtggaga
gagggaactcatagaatccacctccagtagacagacagggcatcaagtggagggatgagg
ttgccatcctacagtcaaaatttctaacccagaattattctgtctaaaagaactgtagga
acaaaaatggaaaaatgattgagggaaaggtggtccagtgaccagcccaacttgggatcc
atctgaaggggagactccaaggcctgatactattactgatgtgtgcctgcagacagaagt
ctagcatggctgtagacatgtacagatacttagatccaaccattgaactgaagttgggga
tccctttgtttgaactagggaaaggctggttgaagctcaagagggtcaccccataggaag
accagcagtctcaactaattggggcccctgagatctctcagacactgagccaccaaccaa
gcaacatatactgagctggttcaaggctcagcacatatacagcagaggactgcttggtct
ggccccagtgtaagaagaggcacctaaccctgaagatgcttgaggtctttgagagtgggg
aggcctggaggagatggtggatggggcaacatcttcttggagacaggccggaggagaaat
gggatgaggaactgtgggaggcctgaccaggagggggcaaagactggacagtaaaaaaat
aaaagttaaaaaaaaaaggaaaaatctcatcatggattggatatgagtataataaaagaa
tttttaaaaatgtttgtgcttcctatgaacctattgttataattatctttttggttgcag
caatactgaacaatggttgccatgtgattttcatttaattgctaaaatggttcttagccc
ttcccagtttcttcagtggcaaatatggcttacagatgatactcctaaattccttaactt
tatcttcagtccctagtctctatcagttccagtagatgttcagtcaactgcagctatagt
aatccaaaactgcctgagtgtgccagccccagatgttcattggaacctgcatccaagact
gcttcaaagtggtgtggacttcctagctccatgcagtcctcaagaacctctgcagtgatt
gaaccagatgcccttagcatgagttcctctcccccttcatggctttgtgcaacattcaag
ccttcctggaatctgacaccagtttcaggaagaaatagttatagaagagattgtgccgcc
actttctttatcatctaaaaagactgaataatctctaaaattaaatggaaatgtagacac
cacatgtacaaatctttggaactaaatgaaggcagttctaagaggaacatttatatcact
aaatgcttacatcagtaagtttgagagatctcaagtaaataacttaacaatacacactat
aatcttggaaaaaaaagataaaaagagaataaaacaaaccatgggagggagggaagacca
aactaataaaatcaaagagaaagaagacagaacagctatagcgcctggagcaatggctca
gtatttaagagcacttcttgctcttctagtggaccaaagtttgttcagtactcacacctg
gtgcctcataaaagctggtaactccaattccaggacctcttatgccttctggctatcaca
ggcaccaggatacttgtggcatatactcacaaaatcatacataatttttaaaaaaaaata
attttaggatgtatcctaatgaaatccaaaaatcatttgagtatattttaagaacttatt
ttccaataaattgaaaaaatctaaaggaaattaataatttttagatgctactaaacacac
tataagtgtgccaacataaaataataagttcagcagacctacaaccaataatgaaattga
agcaataataaaattctcttgacgaagcatcaacaaaaataaaatagaatcaaatgactt
cactgtactagctaccagaccttcaaagagaatgcactattattcaaattactttgcaaa
atagaaaaaaagcactggttctaaacttttttaaagccagtattattctgatatcataag
taatataaagatcacagaaaaggatattaaagacaagtctccctaatgaacatagatata
acagttctcaataaaacactttaaatctgaacttaagatccatatttttaaaaatcatag
ctcacaaccaagttggcttcattctaaaaaatacagagctgacctaatcatcaaacatca
ataaacagaattgaacacataaatatgcttaagaacagaaatcacatgatcatctcagtt
aacacagaaaatgtctttgacaacatctgacatttctcttttttttccttcttttttatt
ggttattttatttatttacatttcaaatgttatcccccttgctagtttcccctccacaag
tcccctatcctctcctcccttccactgcctgtatgagagtgccctccctcacctgcccac
ccacttacttccacctcagcagcctagcattccactatcctgggtcatcaagcttccact
ggaccaagaggctcccctccagataaggcaatcctctactacatatccagttggagccat
gggtagctcctgtgtactctggttggtggtttagtctctgggagtgatgggggttttggt
tggttgatattgttgtcctttctatgagcttgcaatacccttcacctcctacagtccttg
ccctaacttccctactggggtccctatgttcagtccaatgtttggctgtgtacatctgca
tctgtattgggcaggatctggcagaccctctcaggagacagttgtatcagtctcctgtca
gcaagcaatttttggaatccccaatagtgtctgggttaggtgtctgaatgtgggatggat
tctccaggtggggccagcatttcttaatgataaaacaatcatgaagtgagatagcaggtc
tcccagaagtgctaacacaccaaagttcacaggtaaaaccaccattgctgcccaagtggg
atctgtcaggaacccacagaacccaggaactggggagcagtggaggaaaggatccttcta
gttgccatctgcacccaggcctgacactgtggcacagctatccagacatcagtcctgtcc
cacaccccagtcctgcccagagaaaccaggtctcccaagagtgctaacacagcaaagatc
taaggagtggtgacacacctgagatcacgggctcacaggttcacagaagggacaagctcc
agtcatagagcaaaaccagctaacaccagaaataaccagatgacaagggacaaacacaag
aacctaagcagcaaaaacaaaagctacctgaaatcatcagtacccagttctcctaccaca
gcaagctccaaacaccccaacacacataaaaagcaagattctgatttaatatcacatctc
atgatgatgatagaggactttaagaaggagataaatagctctcttaaagaaatagaggag
aacacaggtaaaaagatagaagcacttaaagaggaaaaacataagtcccttaaagatttg
caggaaaagacaaacaaacaggtaaaggaattgaataaaaccatccaggatctgaaaatg
gaaaaggaaacaataaggaaatcataaggggagacaaccctggagatagaaaatctggga
aagagatcaggagtcatagatgcaagcatcagcaacagaatacaagggatagaagagaga
atctcaggtgcagaagatttcatagaaaacattgacacaacagccaaagaaaatgcaaaa
tacaaaaagtcctaactcaaaacattcaggaaatccaggacacaatgagaagaccaaacc
taaggatagtaggagtagaagagagcttagattcccaactcaaagggccagtaaacatct
ttaacaaattatagaagaaaacttccctaacctaaagaaaacgatgactataaacataca
agaagtctacacaattctaaatagattgcaccagaaaagaaattcctcccatcacacaat
aatcaaaacaaaaaagcacaaaaaaagaaagaatattaaaagaattaagggaaaaggtca
aggcacatataaaggcagacctacccgaattacaacagacctctcactagagattcaaaa
agccagaagatcctgggcagatgtcatacagactccaaaagaacacaaatgccagcttag
gctactatacccagcaaaactctcaattaccatagatggttaaagcaagatattccatga
caaaaccaaatttacacaatgtcttccagcaaatctaggccaacaaagaatgataagtgg
aaaactccaacacaaggagggtaactattcccaagaaaaagcaataatttaattttcttt
caacaaacccccaaaacagtcataaaagcttaatttcacttctaagaacaaaatgaaaat
gaagcaacaatcacttttccttcatatctcttAACATCAATGGACTCAATTCCC
Primer
(+)atcaggtatgagggtgaggaga
(+)GGGAATTGAGTCCATTGATGTT


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