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Mouse element [ mm1855 ]


Position: chr13:15,139,882-15,144,637 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCTCTTTGGGACTGGTATTCAGtgcctgaggctctatctataattttcctatgagtgtca
aatattgtcttatactggataaagcatcgtccctgggtcttcagaattgctgagcattat
agaataccatgtatgcctgtgggctttacctgtgtcagatatagttcacaccttgcatca
aaaacttctgctgatgtgaaacacttcatgtgcctgtaggcctttaccctgggtcagatc
tcatcctgtatcttggactaaacctttgtttgcctggtctgcagattgtggtaatgtttg
taagctgtatgtcctaactacattctaaatatgtgtccttatacacacacagataaatgt
agtcttaacccctcatcaaagcagcctttgtttgcaacagacaggagagtattacagaaa
atcatttgtgggatgcactacatatgaatatatctacaaaacaagtcctacatccaaggt
tcgggaaaaaattgcaaaagccagagagtcagaaagttttctgtgagattgtctagtaat
gtatgatgccacattcataaaatcttacctacatggctccagaaatgtgagctgaagaag
aatagcaatagacaagccaaagaagatgagagaaagaccatgatgcctcaaaactaccca
cacatagatagatagatagatagatagatagatagatagatagatagatagatcatggac
gactaagtaatattgagagtaggagaaatactctcaccaggaaaaaaaaaacataccagt
tatctgataccaaaggtcaatccaaaaacatacatataagtaacattatacagactgagt
tggttgtatttaggaatatacatgtatgtatatgtttatgaacatacacatatatgcaat
aacaaaaattaatgaaaaaaagcaataaatttgaatgagaacaagggagtatatgggaac
atttgaagggagaaggtaaatgatataattatacttcaataataaaaattaataaataat
ttttaaaaattaggaccattttctactgtcaagttgaagccgtaggtctcatgtgagctg
gtgcatgagtaacttctttacgcacttaagatagcatatccactcgtaaaataggccata
aataaacctttctttgaatttcaggcagcggaggcatctttcttacctcttccttagtac
cagaattggaaaacaggtgatttctcttttcaatctatttcattctttctgctattctgg
caaggaacaagttatgtcaagctcacactaacactctacagattttgggtgttcagactt
tatcaagaatgtctcttgattggattgtacagcttggaaaaacccggacatatctaggaa
gacagaatattaattgaaaagagttgccaccattagactggcctgcaggcaaatgtgtgg
catattgtcttggtaaaccattgtgggtgttgctactcctcgtcagatggtcctgagttt
tatagcaaagcaagcagagaaagcgttgaagaggaaggcaccaaacagcatcccttggtg
gattctgcttcagattccttccagcttccttcaaaaagtttctgccctgactttcatgga
gagcaaaatacaaggtgtaaaatgcaaaggtttatttccttcttccacaagttgttttgg
ccatgttcttttgtcagagcaatagaaaccctagcaaaggcacctctaataatgcacttt
tcttatttagaggaagcttatgcttcatttgttgatcaccacattccccaggtataacag
cataaattgcaatgctcagcaaataatcttaaggaaaaatactaggtgaaatattatgct
tatcccctgtaattctctatttacttttggatttttccaagaaaataagaataaataatc
aacaataatattaatatgattttgctagatcaccaaatcaatcatttactaacttaatta
tatctacttatacccactactattgtctgtcctggggatagagaataacataagaacaat
ttgtgagcttagagaatttatagcacaaatattaaatgtttttttaaataatttatttta
ttttgtgtgtatagctgggagggtgtgagatcctgtagaacgggagttacagacaattgt
gagctgccatactgggaattgaacctaggtcctctgaaagagctgtcattgcttttaacc
actgagccatctctccaatgtcaacaattaaatattaacacttctttaacattatttcat
ccaactttctttgtgttgttttcatgggctgcttcacataaaaaacagaatttctgttaa
ttaagttttctgaggaatggcatggtaagagtttccagttttgtttttgcgggagcttta
gattcgatgccttaaggctctttggtagcactattccacatgttagcaaattcaaataat
taccttaatttagagtggactgtcattgtcctcattcaactgaaaaataaaatatagtca
gtttctttctgggctatgtttccatcacaatattatttgggaacaggaattaaagtgaag
tgaggtcacctttgaagattatttttctaatgtcagtttttactgtttttaaccaatagc
catagaacaaaaatcactctgtaataatccactgtcttctaaaattcttctaggagtggt
gatgtgtaaagggacctagtacttcccatggagggcgggaggaaataactttcaacacag
gaatttcattgttctactatctatcatctaacatctatctttctaacaatccatccatcc
attcatccatctacctatcatctatctgtctgtctatctatctatctatctatctatcta
tctttctatctatgtgtatgtctgtgttttgcctgaatgatctattgcttgtatgcctga
taccagaacaaggactcaaatgtgagccatgatttgggttctgggaaccaaagctggtcc
tctgaaagaagaacaatagtctcttaaccactggactacaacccatccccacctagtatt
aacagaataattattagcttgaattcacagacccaccttactcattaaagggaccatagg
taccagtacagtcattctgaagagttgtgccgagtccacactgtacattaggtgcaaaga
ggaacaagagtacatgtgatagacaggaaacctatgctctccccaaaacttcagtatcct
aacagaccctcaatgacctacctcctctgagtccacttgttctcatgcaccagagaacac
tcatactcagaaggctgaaaagcattctttttggtcccttctgagtattagcaacatgga
gatgctagtggaggtgtgctcccaagcccttggaccatgtagctatgggtacatgggaaa
cattcacaggacatctcaagctgttcacagtggctgactcagctaacatctgaggacaga
aggatgtggacgtcatgttagcagattgtttttgctctctttgaccacagatgggttcta
gagcgatattttagaatatgctttgtgtttctagcctaacgtctaagttgctcaggaaac
acaagcaatttggattggtaggatttgtaatctttccctggacaaagtgcttatttatag
ttaaaatgagaaattttctaataagtgaggcagctgttaaccatcttgatttatttcaaa
tgtggttgaggaaattcaacaagcttcaaatgtgggaggaaagggcaagcccctgttttc
cttatactatttggggtcgcattaaatctatgttgtgttttctgagagattagaaacaga
ctgcagagtactatggtgatttagtccctgggagctctgggggtattggttggtttatat
tgttgtttctcctatggggctgaaagctctttcagctccttggatcctttctctagctcc
ctcattggggaccctgtgctcagtccaatggttgactgagagtatccacctctgaatttg
tcaggcactggcaaagcctcccaaccagtaccctcagagactaaaccaccaaccaaagag
tacacatggagggacccacggctccagctgcgtatgtagcagaggatggccttgttgggc
tgtttccagtgtagggaagcaccaggacaggaaagtaggagtggctgagttggtgagcag
ggggagaggtgaatgggatgggagttttcggagggcaaaccaggaacgggaataacattt
gaaatgtaaataaagaaaatatctaataaaaaaggaaaaaaatacactatgaactactgc
tctctcccccaaacataaaattcatcagctgcctgcatagatacggtatgctatgaattt
atatttgtgccaaatgagtgcttttaaatggtattttgattcaaacatcttgaagctctg
gaaactggaataaatggaaatgaagaccattcatatttacactttgtatccaccatcacc
tgcctataaaaccagcgtgatctgcacctgaaggatgctagagaaaaagtgcaggccacg
ccccttactgaggagccataccagtgactagcttggggcgtgaggcagtggagagttgtt
atcttttgaggaggtgactgttggtaagtacctcatgctccagtggatgcatatatgggc
gacccgaactggacatagtggatttcaagaaaataaaattaaaaaggacatgaaGTTGGG
GGAGTACTCTAGGGTT
Primer
(+)CCTCTTTGGGACTGGTATTCAG
(+)aaccctagagtactcccccaac


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