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Mouse element [ mm1842 ]


Position: chr3:66,204,101-66,206,611 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Ptx3 - Shox2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGTATTCCACAGCCTCCCTAGTggctcaattatgcagcccggtttgaaaatgattgtgga
ggaagcctgtcagaagcatagatagatacccaggtccaatctagacctactggaccagga
ttttcataggagatctgggaaagtaaattgcttgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgagagagagagagagagagagagttgttttatgtgcatatgtacatgag
tgttcaaatacgtatgggtgtatgtacatgtgtgcagatgtatacccacatgtgtagagg
cccaaagttgctgtcaggtgtcttccttgatgatattccactgtaattattgagtcagga
tctcttggtgaacccagagctccctggtgctggagactctagccagctggcatgtcccag
tgattctgtctgtttcctgagtactgggatcacaggaggccaggatgcctgcctagcact
tatgagggtcctcaggatgctaactggagacccgatgcttgtttgcagacactttattca
ctgagctgtctcccagcctcgtggccaactttagaaaatttgtggtgcaagtgttctatg
aactgagctaaaagaccttccaattcctttgtcccaggagactgtaattctcctctgtcc
tcatggcatgagagcagagagcaatcctttggctggagttgtggctgaggaggctgttgc
tggtctggggccaagtctaggctcccttcctccccctgccgcccatctacacatgtggat
gtttctataaatcacttttgatctgtggtccgtactcaggaagtgctctgactgcttact
cgtgtaatgatggagtggaggaaaggtctaattttggaccaacggtggcttgggcagcac
cacactccccaggagtctgaatttcctcaatgcagtcgcctccctgccctggcagctgct
caccacaatcacacaggcagtctgaagcactctatccatcacagcaaattactggtgcga
tctgctcaggagtatggtgggctagccttgctactggcagtctttgcagaacattcttga
aaagcaagagaaaggcaaggtgaggaggcagagcttagcgggtctgggctattgaatcaa
ttagtgaggcttaccccattccctgtggtttacaggcagaccgaggaaacggggcttctg
agggctgctacgacacagactacattatccaacggtatgtgttatcgcccaggttttact
gctgtaataaatccagggaacggggtgaacgtttgtgagatgccatacacagcaccaggc
tctgattgcattatttcatgtaatttagtcagcagctctagacgtcattaatcccatttt
acaaacgagcaaactgagtttgcccggttcatctaacatcgcacagggaagaagaaacag
gaagctggcaactcctttgccccgatgtctttgctctacccagaatcacacggcacttga
aactcacagactatggagtccttttcctccagagtcaggacttagagagacagagacccc
aggaagaaagaccagctctgacagatgagcagtgataacctacagcggagtttcagggta
cctacctacaggtcaggatggaagacagtattgcagcttctgtcacaggcacaaaaccac
tgtggctcctttctacccagagctcctgacttagtgggttgatatgatgacgacttgtct
tattattgtgacaaaatatctgaataaataaattaaggaaggatgggtttatttcggctc
acagttggagggtatggggacgcccttgtggcgggggcttgaggcagctgatcatgaagc
ctccatagtcaggaggtaaatagctgagatgctagtcctcagcctggtttctctttttta
tccagtccaggagcctaagccatggaatcgtgccacccacatttagggtgagtctttcca
cctcaattagcctaatctagaaaatccctcacacgacacagcaggaggtctgctaccata
gtgattctaaatcccctcaagttggcaatcaatatcagccatcacaattagtgggtagat
gctgatgcagagcccttctctggggagtgtccccctatctgcaaagggttaggatttcca
tttctggatctctgctgcatctcagagaggggaaggggggagggcattgatctcacctcc
aaaatgcatttgactgagttatgttcctggggagaagaaagttaattcttcataggattc
tttctcccagtgaaaggacacactaagactgcccatatctgctcaggtctgaggctactc
aagtcacaggaactttgaccatccagccagtctgatggcagggccctgatgccatctggt
gccttgtttccgtggtttggatatactggatgaagggagagaatggataacctacaggaa
gtctgatgaacaggacaggcagccacagtCAGTTCTAAACCAGACCTTGGG
Primer
(+)TGTATTCCACAGCCTCCCTAGT
(+)CCCAAGGTCTGGTTTAGAACTG


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.