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Human element [ hs1823 ]


Position: chr14:54,085,571-54,088,690 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: LOC101927620 - MIR5580

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTGATTTCAGCCCTGTGAGAacccagagtagagaaccaagttgagctcacctgctctacg
gaagtgtgtgataagtgttgttttaaggtgctaagtttgtgataatttgctatataaatt
tttttagtaaaatgaaattgctgcaacttccattgccttccattgcctgaaacaaatagg
aatagaaagcaaatatgagtgcttactacattgcagaaaagactagaaccaagaaagtac
tatgctgtggaaaagactagaaccaagaaagtaaggtggattactcttagctttcaggtt
atgtcacacaggttgccacctgaggtcaggaaataataactggcccacagccttgaagct
ggtgcctagaggtgaccagccagctactatgttggtcacatctgtgggagctcatactca
agtcaccaccaccaccattgacagaggaagaggcatctcttgctctctttccccttacag
atatctcacaaatgaatttcattgtcaaatgtaagtcaaattcagaaccttggtggaaag
caaatctgggatatgtagttcccaggcttctggtgcctgagataaaggggaacatatata
aaggtggggggggataatgctgattgaccatgaattttacccaatatggctcttcagact
ttcaagatccctttaagtcagcattctcataggagttattattttcattttacagaccag
aagactgagcttcaattgggttaagtatcttgccaaagtttcataaatggtatgtagcaa
aaccgagagtagaactaaatctctttctccccaagcctacatttttcaggctctgcagct
ggcgatggcctgcagatggaatttatattattggctgacaattgggccatgtagactcaa
ctgagaaggcaatggaagttgcagcaatttcattttattaaaaaaaaagttctcctggta
aagggctgctattagactcttggaatcctgtccagcttcatcttctcctcccttctgtca
tccaagcttcctccttggcccacattccctaactttgcacacaaaccttgcaatgtatgc
tctgatttctgggttaaatttggtgaagggcatcccctgctgtccttttacctggtgaat
acatggaattggcccttctcctctgcgtttagggtctcactgccctccctcattagttgg
gatctggcgctgggctatgagcagcatcagtagtatcctctactaaagggaatcatgtag
catttcccccagacagctctatcttccctgcataccaatccaattacaaacaaattgggc
cacaggctcaagcatgagagcaatttggccttctctcctctactgctgacagctttaaat
ctgctccctttaaaaactcaactccaggaggggattttagcacccaagcttaagagcagt
gggtgcaattatcccaaatatcagggtgccgagagacttagaggaagagctccagataat
atttttcagggaaaaaaaaattaaagagacaggttctttgggatttccccatggctgcag
gttagagtcttggaggctggtctttgcaggtctgttattaacttggcctgacttgatcgg
ctctctctggattcccttttcctctctggctggttgccttttctctcctggactctgcct
tagtggtgaggaattcattcctaggtttctggagggagagaaagaatgtttcagctgtct
ttactatgccttaaaagacatagttttttttttttgaaacatatgctcatagtttgatag
agctgaactcacataaaagcagagcatcttcatatggggtgacaagtggacagcccacct
cttcagaaagcccaggatcagccaggctttctccccatgatgaatcccatgggcaagctg
ctgggggagttgtgtgaatttgctccttctgccttttaaaatgtccatttaaatgtactt
taaattgaaaatccaacgtaactagaaagaaaaacagatatgaagtaagattgtacatgt
agggttttttttaatcaaaattttccaagttcaggttttcttgaactgtaattattgtgg
gttacatcttggcattgatgcttaacgtgctacctccctttcctttgcctttttgaggga
aagatcatttgccattttctatcatcacaccagccacactttccacatgaggacccactg
gggtttctagggaaattcacttgagtgaggtgcccagctggctgtgaggctggggcattt
cccttttcatcccccatcaggggggcctctcctacacaaagtttgcctctcccacaccac
tcttcttttcccagaggtgtctccagtgatttctaggatgatctagaagaacttactgag
atctttaaatagtgaagtgaagtgggtaggtgcattctctgctctcatggagtctagggc
cccagagggaagcagataggtatggctattgcaggaagtaaaagcagtgctgggatggga
agaaaggtgccaggagagcatgacaacagggtacgtaaccccagcttagcaggaagactt
cctagaagaaaaggccatcaagcataaatatgttaataacattgccacagtctctgtgac
gggtgtcagaaactgactcaagtagagaataaaagtgagtgtcgctaaggggaaatccat
caagggagagccttcatgggatccacttggatggactgcaacagtaccatggccatgcca
atggactgtgcagctgcactttgatggcctttgactctccatcactaagtcagtcaaagg
gccagagctcctcctcctttatttcctgtctctcttaagcaacagctgtgtaactcagtg
cctcttgatggggaaatgttgaataggagagaggaatccctagaggtctgtgtggtgagg
ggagtgggagatgaggctggattttccttcggctcagttatggcacctgcctcacttcat
ctgagctttcagccctcaggtcatgatagaaaagaagatgctgggatcatcctgtcaaac
tgtcaaatttgggggtgaatgaaatattcactagggagctCCAAGAAGCCAGAAAACTCG
Primer
(+)TTGATTTCAGCCCTGTGAGA
(+)CGAGTTTTCTGGCTTCTTGG


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