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Human element [ hs1790 ]


Position: chr2:121,562,286-121,565,707 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: GLI2(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGTCCAGAGAGCAGAGCTGAgttcccctgacagcctggttcacccaggaagcggggtgca
ggctgaccacccagatgtttttcagatggttcaggagtgtactgcaaggttggacgcctg
gggcgggagcatgaggttggagacttcttcctgctcccagcagagtctagtgggaagagc
atggcttggggtcaggcagatctgggctcttcttaccctctgcttaccagccgtgtcttc
tgggcaaatcaaggaacttctctgagattcgtgcagtggcgatggtagtggtcactactt
ctggctaccatggaactaagcgagacaaggtctgcagggtggctagcagagcatgtgggc
acggaggaagtaaatgtccacataacggaaacccgagcattcctctggcctgtcctggcc
tcacactcactgccactcagaacggctgccgtccagaatcagcctggccgccccatttcc
ccaagcacaacaggtttgttctctgcttctggccgcagcccggggtctggactctgggag
gctctcctggcccctgcctgtcgctccccttggttgcagagaccggcacacatgtttcac
gtcacctctgtgtcaccttgttttctggctggttcctataagctggtgaaccctacctgc
ctggaatgacagtgtcagaggacagtgccggtggctcctgcccctgtgtgctccctgggg
ccttggccatgcctggccggcactccttcatttctcacggttcactgtgaatgttcagct
gatgcagagttgggtgaagcttcaaagtcatttccacttacagaactggaagaagctttt
gaaatcctctagtttgaatccattcattttacagatgtggaaactgaggtccagagacac
aaaatgcagagggttgcctagtgatattacttggactggaaaccaattccgcaggaacat
tccatcacatgggacacagctgtccctcaacctggccctcctcctggcccaaaccccaac
ttcccaagtgactgtgtttatgttggaaacatttttctgacgtttggttctgtcaaaact
aattttagcatttctaaagcttggtaaaaatacagcctcattactttgatgtcagtgcat
agtttactattagtatattctggggtttatcattttagtcatgtttaacacggctgtgcc
aggcatgcactattaaatctggcttattttacattcctgtccggaattatttatttgtaa
caatttcctctctatcaaaagacacagctaatgctgtgttttaatgtgttatttacacac
aaaataacctatttacaactcagtatgcgccggagggagaatggatgggcccctgtttcc
tgcattctgttatatcagagtttaacaatctggattgctaatagaaccatttatcattac
ttgggagggggggaaagagataatttattttatgtttgtggccaggtctcaccgcctctg
atcttgggaccattttgaggataatgaagtgaagccctgcatttggtgggggctgtgggg
cacccgggcctgggtgcctctgggttccctgcattcatgtgcacatcctacagatggtcc
cgaactgtggaccagagaggtggtgatgacagggacgttgcctctgccttctaggagctt
ccagttagaggtgacactcagcagatggtgacgaatcctgcccatagggcttcacggggg
aggcagtgtctgagcctggggacattcggggttccaccaggtggaaagaggaaagggtgg
gtgggccctggtgggaggaggaggggcagagtggccccctgggagtgtggggagggagga
ctgggcgccatcagctcagtctgtatgtctcctgcgtgagtccatatgtctcctgcctgg
catatggggtctgaaggacaaggctcctgttgccctgcggggaggcgcagagatggctgg
cacccaggtgggtgcatagctgatccagggtgcaggccgaggtcccggaggctccactga
agtctctttgaatggacattgaggggtaaggagggaaagcgccatttgaagctgctgtcc
tctatgaagctctgtgtggacaccagagggggataggaagtgggggaagatgcatttaag
aagcaggggccatggccctgtccccaaaagcttgtggttcccccatggagaaaccagaca
ccccagttacgatgctgatgtgggcattgtctgctgcctgcagtgatccaggaaaacatt
agggaaggagtgtggtctcagtaggacctggtaacactgctgtgtacagccctgtgacct
ggctgctcagtcagtcccacagaaagccactgtgcactcagatcagggggctggggaggg
ggtcaccaaagtgtgattgcaaagtgtggcagggcttgggcaagcccctggggacgatgc
agggagccatcagccccaggacaccagcatggtctgggggatggggcctgggcttggaca
ggtgaggtttgaacccttgccctgccccttctcggttgggtatcctgtgctgatccgaac
cccagtgtcctcattttaaacgcaggccaaaatgcgtatctttggagggctaggctgacc
aataatgagactccagtgcttagagggtccctggcacacagttggcattctgtacatggt
agttcagctgttagtattatggttcttgctcttattatgattcttaattcaagaactgtt
ttctgagggtagcgcatacgttccttaaaaatatttgagagagcaaatgaaggagctgag
tctctataatgagttagcagttcacccgtgatgtgcaaggaggaaccacactctagcctg
agaaacagcatgggcaaaggtcctggggtctgagaatggctggagaggctgagctgagcg
ggaagcactggcaaatgaggctggttttgtcagccccttggcaaagggctcccttccctc
cccgatcctggcacaagctcacatctgaggccgagtctagtggcccctcctagggtctgt
gtcctccctctgctcacagccacacgtggacgctggtaactcagccaggccctgtgtgca
cggcttgcttggaccacccccccacacacctccccgcccccgccaccctgagcatctggc
ttcttctccttctgggtgggcagggtggggagggagccagaggggctctgtcttgagaag
ccgcccttggctctttccccttgaatatgtcctggctggccctgctgtcagagggcgtgg
acctctgctttgtgttttgggggattgtgaagcttgaaaccctggcaccagacagccagg
cctctgggcagagcagggcctcatccgccgtctgactttCCATCTCGTTTTCAGCAGTGa
Ta
Primer
(+)TGTCCAGAGAGCAGAGCTGA
(+)cacCACTGCTGAAAACGAGATGG


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