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Human element [ hs1788 ]


Position: chr6:115,670,684-115,673,099 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: HS3ST5 - FRK

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGCCATTAATTCATCCATTCattcaattggcaaatattcattatgagaatcttatttaa
tcttatataatcatggtaccaggatgtaaagatactttgccaagtaaaacaaacatgtac
cttgctgtaagtctagtgagcaagccagacattactggagaaattacaatagataaattg
taactgcaatgagttctataatataatttcgtgtatgacttatcccagaattttgcatga
acaccaactcattaatttgttttggattttaaaaatttttcttaaaaataccccaactga
attcacttatataaataaagcataaaaatgaatttgaatgctgttaaatttctaaaataa
acataactatttttaaattcagatggcaaaaatatctgaacaataaatttcactataata
ttgtaatgaaaataagtttacataatattacattatgtttatagaaagaacacaatgatc
aaataatttagaatattttctgtaatattatataaaacatttcttgaaaagattgaaaaa
tgtgtgtcatgttaccgagaatttgagaaatcgtcaattacataaataaaaatgagaaaa
tgtaaataatttattttagaaactcagatataaaggttacttataatatttttattttta
gtttcagaatatttatgaatgtgtaaatgataaccagccaatagccaggttaatcacatc
acattgttttagtataatgttctcaagcaggagtgatgttaaaaagaagaacaacaagaa
aacgtagtgtggagtccagtccagtattcaaacacaaataattacagagctattcaaatt
gtaggaaatgttcaatgtatatttgaattacaaaattgaagtgggtgtctttttacaaat
gtccattaatgctaataaggaaagaagtacagagtactggggcgccactaatcaggcatt
gtcaatgttgggtcaaaagaactaagtgataaaggcaaattttatacacttagtagtaat
taggagattattatgtatgattttatcttaattggttttgagaattaattgggtggtaac
aaaagctggcaaaaatcttttcatttgagtagaacaattaaaaaccccaaaaggcttgga
gctgatgataaccactctactggattaactcctatctataaaatcagaagcgatttatta
tttatctgaaaattaagttaatgtcaatgactaatgtatattacttagttgagtacattt
caactttttaaagcatgtttctttagataaggtcaagtctgtataaataactgatataat
agtaagcaatttctatgactacatttttctcatttagatcaaaactgaaaatatatataa
ttaaagtaacaagacatagtatttattactctctaagagctaaactgcggtttttttttt
tggtttttatttttgaatttttgttgttttttgtttctgtttggtttatctgtctgattt
gccacgctaaaaatttatattgggcttaaattacaaataaggaaaaaaattccagccata
tacaataacatgggtgaacctggagtacattatgttaacatgaaataagccaggcacaga
aagacaaatactgcataatctcactcatatgtggtatctaaaaaagtagaacagagaagt
ggagaatagaatggtgatttccaagaactggaggagtagcaaggtagggaggacggagga
gatgttagtcaaagcatacaaaatttcaattaggatgaaaaagttcaagagatctatcat
acaatatggtgactactgttaataacaatttatacttgaaaattgctaaaagattagatt
ttaagtgttctcatttcaaataaatatatgaggcaattcatatattaattagcttgattt
agccattttcacactgtgtacatcatgttgtacaccataaatacacactttttttgtcaa
taagaaagagagaggcagggagggaggaagagagggaggcagggaaagaaaagcccttat
ttctggatttctatgtcttgataaggtcaaaattatctcagcctttcttaagattaattt
cttaaaatttcaacttatcttttaacatagtggttcaaactaagaaagatgaatctagcc
ttgatatttattataagtaaaatattttggaataaaccctagtttgtcagcaattaaggg
gattgagttcactgtcaagcaaatatacataaagactgatcatttatttttagaatccta
gaatgctaaattaaattatggctgaagaaaaatatttagtcacaaatgacacacatgtat
ttataatactgctgcaatgatatgattttctagtgttatgcttaactggttaataTTCAG
CAGGAACCATTTGTTC
Primer
(+)TGGCCATTAATTCATCCATTC
(+)GAACAAATGGTTCCTGCTGAA


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