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Mouse element [ mm1777 ]


Position: chr13:49,559,816-49,564,650 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Cenpp(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCTGTAACCCAAGGCAGAGAaaatgccgccttccacacatcctgcaaaggcttcaggaaa
gtggcttcttcttgtgtgtttgggtggttactgattaaagtatattaaaagctgatctac
aaagtgcactttatgacattttcaactgttgattcttcccatgtaaacccagataagata
ctcaggtggctttgctgggcacactgagacatcctctagaaagggtagccatacacccag
agtcctacctcgctctgggactttggtgagaagatccagctttggaaaaaccatcccttc
ctcatcgatttgtatcttccagacaatcaccagttcaaacctgaaaaagaggtgatgttt
gttgctcctgggattcaaaaagattagtcacatgatctctgctgaccaggctcacctcct
aaatccatctccccacagaggaggaggatgtctgatgagttccataggacagtttggaaa
tttgtactcaccatggcaaacatcagtgtggtaattaatgggacagacagcatactttga
aaatgatctggaattgataggaactgcacactgtaagagcagccatgtgccatatggaag
gagaaacaggtataaagctcaggcccctcaggcaggcctgagggatacagccagaactcc
tcactggaggatgaggcatgagaagaagtgaactacaaccacaggataaaggccagcccc
agtggcctgtataaggaagaccctgttagaaggcacaataggtgtagttaggctgttgat
cctgggtcctgacacacatacaggcgtgtacaaatatgaagccaggctgaagatgaacag
cagaagcctgacagtggctgtgtggggtacttccaagggtcttaggtgtagaggggcatc
tgttttggtattttgggttctctctggacctttggcttcctcctgctgtctctgtcatgc
cagcagtcacacacctctgccttctcttggctgcccaaggtccctgaggggaagtgtctc
tttctgaaccccaggccagcacttagatcctccagccatggatactgtccttccttcatg
gttatacagcagtctacctgcccactgttggtggtttctcctgtgatgccacccacatct
ccactggatactctttagtcctcttcaggtagcttcttagcctctcttatggacagtcct
ggttccaggggtatcgagatgcacagacttaccctggctgtctggtactgcggatctcca
tgcagtgggaacaggtaccctccaagaggtatacagtatctgggtatttctcctgtatgt
gaaaatgttacagtcagatccctctagaagtagcatcctgaaagccaagagaaacacttt
agcacctgagatggaagtgtcacacatgccattattggtacggatcccgtccatcctcac
agctcacgcagataagctttttgtccttgacatgggctagcccccacccaggtgcccaac
tacagtggaggtaccaggctcccactctgatagggcaaagcatgtggtttgttaagagtc
agcttcatggtgagacctgtcctggatgcagtgttctgtctgtagagaacagaaatgggg
tgagtgtcacagataagcagatacggtttcctcagtatgaatgactgctccgggcatgcc
tccatgcttgtccacaataggatctaggaggctctagcatatcagaactgtcatgcattt
atatcaccatgacagcaaagtttgttttccaagtatctgatcagaagacaaatacaacag
atgaccactttttgtcttcgcttgtgcaaaatagatgataggcttatagactaaactact
gacttgagattgacctcaccacaagattttaaggcctcaaggctgatctttgaaagatcc
ttccgtgtatcttctcagtgccttaagacatgtttcccaggggtggcctaagtcacgcaa
ggactgaggggcagctgcccctgaggtagggctgaggctgggggcagagccttctgcgag
tgtagagactggctagattaaagcagtttgggctcatcgaagaaagttccagggggacaa
atacgtatcactacccttcagagaatactcccccttggaaagctactgctaacatgggaa
gccaaggctgccagcgtctgcatgtagccaccaacaaagaacacatccaggctccaaagc
aggggtgggctggtgtactttacagataattactaatttcagcaaaacaagtttttagaa
ggaaaatgtatacctaagtgatttcagtggaaagtgctggttgatgttaaaacctcagac
tcttctaaattattaacaactgttcgaagaatgtaaaggagtgtgtgtgaacgtggcatt
tcggcttccagactctgcctggcggcagcacatgagactcaagggagtactggggcttgg
gctggctccaaggcggggcctgaggcttggcctccaagcaggagggagctgatttccact
ccctgggccatactatcgaatgagcaaaaggaaggctcaaattagatgctttcactaaaa
agtttacttagtttttaatgacaaagacagaaatgctgacactgggcagagggcagccac
tcaaccccatgcttctggaaagctaagactgcaagggctcccctgcactaagttaaggtt
gctgcatttccagcttcattctttgcctggtcacctcaactccggaacacagtggacagt
taggaaggaactaaaagctgacagcctgggtggacccccaagaacagctatcttcttatt
atagatactaataaagtgttattcttaatgacaagggcatagaagactggggggaaggca
gaggagctctgaaaaataatcagactatgcactgttcttgaagctggggatcagctaggt
ttaagagtgacaggaaatttgagttctcactatattcgactttgataaggaagtagacta
agcaggcaggaaagagttaattatggtccctgacttacaaagtgtattccatgaaaacca
gtaagagaacaaaaggttcatcagaaactgtccacctgatatggaaacataggtctcatt
cttccatcagtcaagccaaagcccagagaggggaaacacctctctctggccaggccctgg
aaggacaatcttggacatgttctgtctcatgcacaggtgtgttcttcatgtcaccagggg
ctctggtgtagagaggacaatagaagcctgtgtgtctgcagatgtcatcaggaaggctgt
gttatggaggtggctgttagagaggcctcatgcatactaaccagctgttagtgcctccac
tctagggccccaggctctccagaacgctgggcctgagggccactgaggaaggttgcagcc
atgagtttactcagctgtgtgccacatggtagaatttgcatgagggggaaaaaacccaaa
aagcaaaaccctaagccctggtgtttatgatagataaatggatgtgtgtgtgtgcacgct
ggtcatttgatatccagcccggctcatatttgacacttagtactatggcactggctgatg
gagtacagaggggctgtattttaacaggcagcctgccttgtactatgcttcagctacagt
ggctcaataccataacatcacctccccttcaactaagttcctgcagcagccaatgaacag
ggcaatcccatgggcagtccggatgtccgcagatgtcagtttatcctgacttcagaagat
tatgcctgaacaatggaattttttttaaacctcataattcaaagtgcacaaatacagcat
aataaaacaactagaacacacaattttatatttccaaggcagtacaattataccactttc
taattcccccatgttttcattgctttgtagagaacctctctggtctttaagtgtccccag
cacagaattggcaaccattaacatattttctgttatagatttcctgttacagatacttta
gacaaatagaatcctataatatgaactttttcttgtatctgttaactaggtacatggctt
gtttttaaccttgtttttgatttcaagatagggtttctctgtgtagccctggctgtccta
gaactctatgtagaccaggctggccttgaactcacagagagctgggattaaagttctcta
ccaccatgcctggctccatcattatttagagacagggtttcacactagctctgtctggcc
tggaattaaacattttgtagagcaggatggccttgaactcaagagattggcctgtctctg
caccaaaggtgctggaattaaaggagtttattgttaattcaaagtatgtgtgtgtatgta
cttatatgtacatatgtgggtacctctgagggcaatgacactggacccctggagctgaag
ttataggtagtggtaagccatgtgatatgagtgctaggaaccaaacttgggtcctctcta
agagcacagagcactacacatttttaactgagacttggtgattcccatttagctactagc
tatgcgtaccagcaagctccagagagcctcctgtccctttctcggtgctgggattacaag
tatgcacttccatatatgcacagctatttttatttaatatatataggtatttcgcctgtg
tgtatgtctgtgcaccacatgcactcctgatgactgtaggccaggagagggcatcagatt
ccctagaattagagctgcacatgcagatggtggttagctgccagatgggtgccgtatggt
caaactcttcctgatTTTTCAGGGACCAATGCCAG
Primer
(+)CCTGTAACCCAAGGCAGAGA
(+)CTGGCATTGGTCCCTGAAAA


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