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Mouse element [ mm1774 ]


Position: chr1:19,755,671-19,759,742 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Tfap2b - Pkhd1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GATGAATGCTTTTGGGCCCAaggatcagagcacacttgtatctcaccgatagggcataga
agtgatggtcattacttgccccagtacttggcatcttggttggctgggctattttaagtt
cagtttcaatacttaaaactactaacttgatagagctcttacctagcatatacagaactc
tgactttagctacagtggtaaatatactgtggtcacacattcctatattcctagcacacg
ctggaaacaagagcctcagaagttcaagggcttcctctgctatagattgactctgatgct
ggtatacatgagaccatgtctaaagaaaaggaagaaaggaaggacagaaggaatcaagaa
gcaacatcaaagaaaaaaaaaaccagacaaacaaaagcaacaataaaaacaagaacctag
aagcatttagactaatgtgtaattacacttcaatgcatacagtactcacattctaaattc
agacaactgttaatgaatcatatatttgtattaatttcttggaatgatagtcaattataa
ttatatttatattgattatataaattttatgtatatgatcatatatattatgatatatag
tcagttactaataattaactgttaatgtaggtcctaaaaccacaatgttttgatacatct
ctcaaatcacagatattgctttctctatcataatagaggatagggtagcgatgaccacaa
aaagaactgcatcagattcagaggaagtaatgtcctgataaagtttctttcttcttactt
aacacaaatgtgaaagattttgacttctcagttttacaacctaactaaaaggcttactgc
atgacaagaaactgtccctaggtgaaatctaagtgaaacttctaatgtctatagagtttc
aaatttatttcaagactatcttcacagagatcacagtattaaagggaatgatcacccact
aatgactacattatcatatgataaagtacgatgtaggaacgtgtcaaaactaaaacccat
tactgtggctgctgatttaatatatttaatactgccaaaatatgtaagatttataattgt
gctattttagaaaaaaaaaactatctcaaggtactatattttagccccatttgagacact
acgaagcctgtaaaattcttaattcttagtctacggtcaggttttgaaggactcagattt
gtcagtgtgattaagtatatatgtaaagtatgtatgtatgtaaataggtatgtatgtaaa
taagtgtgtatgcaaataagcatgtaaataagtatgtatgtaaagtatgtatgtatgtaa
ataagtatgtagtaagtatgtagacacatagagccatttcttgacttaattttagtgtca
tgaacttgagggaagtagttaatttccaggttgcattctaccacagtgtctcacctgatc
atttcataagattcaccccacccccacccaagtacttctcagctcatcacagtagtccca
gtggtgcacacagtcacttagagtgtaattctcaaatcattcctgttagatttcaactcc
cctctttcagagctttattcactttattcacttttgcagccccctccctactctcttcca
agtcccccccaccattaccccttccccttctgctccaagaagggaaagccccccttctcc
tttggtacctcccagcacagagacatcaaatcacagcagaactaagcgcatcctctccca
ctgaggcccaaccaggcagtccagctagggaaagggatccaatgacagtcaaaagagtta
ggggcagccctttctctttttaaggcacctgtgttgctccccgctggccttcagcccctc
aacctacctccattcaccctgcagcggtagaacccctgctcttggcccaaactatgaagc
tctttcaggggtcatttgcatgtttctgagcttggtccttttacatttgtttctcatgtg
gatttcattgtcagccaagtgtgcacggcttgtcttccattatgagcaaagaaaaacaac
aaattcagcactaaaatgcagcatctgtgtcaatacgtgtctgcgtgatggggttgattt
aaatctgagcccatttgtttattttaaatcagagactcctggtatggcaatccactgccc
tgtcgagcctgcagtggaagcatcattctgagatagccacttccctttgtagctgtcagg
tcgggaactctgctgaaaaccacttctcctagtgcctggcttgcattatgtgtaaggcca
cagagaacagagttaaaagcaagctcctttcatctccatacagcaaatcctttcactttt
gccttctgctttaccttgtacattgttgcaacactaaaagttttaagacagttgtctttt
catactttctggatggcctcatgctgagaatcggcttcctagcaggagccaggatatcag
gaatgtagaaaagccagtgaaattttaattggattaaactccctgtgtccctccacaccc
cactctcccaatctcctcactgacaactttctcactgacagcttaactaacaagatattt
aacaaagcgatgtggcattcagcagggcctcctgtcttacctgggggtgggggtgggggg
tggggtgggggacacacctgggccagctctgagaagcaacaggataacacataactgaca
acaacccttgctcagatactgtcaccagttcttgggctttgtgcatttctccaatgattg
aaactcaaacctgaaattttaactgctcagagtgattggatcgagcaggctcctcctaac
ttgtggttaaatgccagagggggagcaaagtcacttccctggtctttaattcccttggcc
aagaaaaatcaaaatctgtccatttggcacctttgagagggaaaaagggcaatacaaatt
ttccttaataaaatcacgctggctattaaagagcagccttgccgatgtcatttgacgccc
tttcccagcagggctggcgggcataggtccagggtgtgtggaagcgcaattggagacatt
agttacaccaccttaggtacggtagcaaaataatatttgataaatgaaaataaatccagg
cggacacaatttccaaatagtttttagaagtacctgtcactcctagcctctcttcttaag
cagaacccttggtgagcgaatccattttatcgctccttcccagcagaaaatttcagtgtg
ccctaaagaacagctttaggaaaaaggttgacaaccacatgtttttatgactattaggga
ctgtctaggcaagctccttctagaaagttcctacctgaaacccaagaagaagaaaatgtt
ccctgtttcatattagccacacaaatgcaagtgtgttatcatgtatcttccacaggaaca
cacctcttccccacgaggagaactaggaagacctgggaattatgaccacgaaagtgatca
cctagcgatctaaggataagtgccctgacttaactcagctttaatttggggaaagtgagg
caagacctttagcaaacaacaacaacatcaaaaccaaccaaacaacaacaccccccccaa
aaaaagaaaactcccacaaacaacaacaatagcaacaacaatgaaaagcaaaaacaaaaa
accaggggaggcagatgaaaagcagcataagaatccaattcaaatgatctgggagatatg
tgtaatttgacaaaattagaattgggagtaggacatctcctgcctcctcttgtgtttcaa
gcttactgtacttaaaatcctgtgagttcagtttatgatcttttaaattttacagtagtt
aaaaaaaaatgacatttgtctaatagaatgaatggcccaggcaccacgtgatgactatat
gaggaactgatacactgccatgttactacttcctgatgcatgataggttaggtagaataa
aggcagcattttatttagaatgaaattatcttcccatatatttataaaaaggtgagcttg
tccaaatttggggggctgtggtcctctacctgCGCTGAGAAACGTGAGTCAG
Primer
(+)GATGAATGCTTTTGGGCCCA
(+)CTGACTCACGTTTCTCAGCG


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