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Mouse element [ mm1771 ]


Position: chr13:55,860,649-55,864,992 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Pcbd2(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGTAGCAAGTGTGTGTGGGAgctcactccatgtatatgtgtttacatgcatgtgcacaca
tgcaagcatgtggaggccagaagtcaccttgtttttctgtcaggtctctcactgacctgg
agctggcctgtttgggtagactggctggctcaaaagcactaggggtccccctgtccctcc
ttccccagtgctgggatgcctcacggtggtggggattgaacacaggttcttacatgtatg
tggcaaatactttactgactgagccattttcttggctcagaaaaccaacttgtaatggaa
agtcatagcttttttgttgttgttgtgacagagaattctgctgtgtaaataaggtgactt
agaatcgtgtagccaagtttggttttgagctcaaaatttaccccctgtcctcccctcagc
ctcagctgctactggtgctcctcctcttcttcctcctcttcctcctcctcctccccctcc
tctttctcctcttccacctcttcttcctcctcttctagttcttctgatttttggttaaag
acagttgtgagctggcacgtagatgctaggaactgaacccaactcctctgcaagagtaac
aattgcttttaatcactgagtcattcccctcccctccccttcccctcccctccccctccc
ctccccctccccttccccttcccctctcttctctctccctccttgccttccccatctctg
gtttttttttttttttttttttttttgagatggggtttttctgtgtagccctgcctttcc
tggaactcattctgtagaccaggttggccttgaattcggagatccacctgcctctttctc
ctgagtgctgggatctgcctcagcctcttgagtgttacaggtgtagttgggccttggtga
tgcatgcctcagttccagcacttgacatgcagaggcaggtggatctctgtgagtttgagg
gcagcctggtctacagagtgaattcaaagacagccagggctacacaaagaaatcctgtct
caagaaaacagaaaacagaattacaggcacgtcctaccgtgcactctgttggtaagtgtt
aacttgaaatgccaccagaactgcagactgccttagacttttacaagtttgttacttgcg
ataaggcactcccaaattgtgtttttcctttgaatttccacagcagcaagttgtaggttg
tgaaaaatagagatgccaccacctatatcctctattcctgcacagatacctgtgacagtc
aatctgtggtgatggggaaggaagtgagctccaggcaggactgggtggtgatgtcatgtg
gaccacagtggagctgggatggggaagcaggcagggcatcgacgtcctgtcttactccgt
tgtgtttcatcgatccagtgattctatggcagagctgtttcacactggtctttttgggca
gaggttattatgtgtatttgcctgggtaagcacattgataaacttgtaataaagtgcatc
agaccgtttccttggcagggccgaccagaacggcctgtgaggcagagctgtttccaatgg
agcgtggaaagctttgaaagcaacatttgaaaccaccctaggactattgtctgttttcct
cttccccaaccacgtttataaagattcgggcagacaagcatttcattctgacttcagata
ttctcagtgactcgttatctgcccggcggcggcgcctgcgcaacccccgcactttttctt
tcactcatgaaactctaaaccctttcctcacctcctcccagaaacctggtgcccgtgggc
tctcctgtgtttggagggtgaagggaagcaggcctccgagaaagcctggaatttgaagtg
tgcgactcaactgtagctgtgaaccagacaggaacacggccaggccgtgcccaactgttt
gtctgtcttctaccaggattcttcactgcagaagacagtggttagcttgggcatctggtt
aatcaaatcatgcgtcccctgtaagcattacaagaggcatgattgaggcatttgtaaaaa
tttggctcatagtaagtctcatcataatttaaaaaaaaaaaaaagaattactttctttgc
tgacattaaaacccaaagccagctgagaggctgtggttcctaccactacacctggtccac
attgtgctggttgaatccgcctttgcttcactgtaaatgattttgagggtggaattcttg
tattgttttctgtcttgtaagcccttgacattgcacggtacctgtgcgctcgcaaaccct
gaacaagggaagggccggctcggcctcccaccgaaaggcgggtttgctgcatttgttctt
cgtgctctagaaggaggaaacgctatgacaataaacagaaatgcctttgctgaagagaag
aggagagctggtgtttatctagtcaggtggtttagattagctgtgatgcggttctgtatt
atgttactttaaatcattgtgtcccaacaggacataaattatgaagattgttacagtatg
tttcatcctatgtaagatcaacaaattggaataattttttttataggaaaatcacagtgc
tttcagtcaggactattgaagcctttaatttgactccggtatttctcagatattattgcc
taatatgtaaaatatgatttgcataagatatgaaataataagctttcgaaacaagaggga
ggaatctctcccttgcacttggatggacggcagtctactccctccggcctctgtccgcac
tgcagggcactcgtgcctgctccttccttgctgggctagcctctgctctgcctgccgccc
gcccgtatcctcagctgcccagagatgtgacaggcccaagggcgtgcaaacgttgtttgt
acacagtcaggaaaacactttctccaaatacatggttaatagaaagtaagttccacgctg
aagccctgctaactcagagtcggatgttaaagtaattcatgtatggatattgacgagtaa
tgacttaaaaatacattccctgagtatttcctccgttcttcactctcttctgagctacac
tgcatctctgaacttttgatgtgggtctgctgtcagccgtactttaccaagtttatttgg
tcacaaagaacacatgttttagcttaaaaattagtttgtgtatgacggggtcccgtgaac
gtggcacatggtctgcacactgaagtcctgtcgttatgagcactcttccttcccacggtg
acaataagagactcacaggcattaaggattcagagtgattagtaggggtatgaagtttat
tcgggaccctgggaggagacatacccagaattcaaacttttcagggtacgacggtggcac
tacccatctgaatgccaagtcttcgataccaaaaataaagcgagtgctaagctttcttac
tccctgtggccgggagccctttctcttgacttgcttagtaatgctgtttgaaacacacac
acacaaaactccatgttccttcttccactccacaagggcgggacttcaattctccttcag
cttcaccttaacaggtggtgacaaattctgactacacggtggcttgcttcaggtcagtgt
ctgaaggcaggtggaagtgccatcccatggtcagcgctgtggcgtgctcctccacacatg
cacatgcacacgcgcgcgcacacacacatacacacatgcctaccccttctgagaccgcct
ctttcctggttgctgtctgcttggcactgccgccgggaacttggttctggtggccgtttt
ccttccagcaatgagttgccatcatcggtctctggtgctcctctgtgaagttatcaggat
gcccgatacttgattgatgtatttttccttacagaaaatattggcaaatgtggtagaaac
tactttaaaaatcctgagggaattggattcttggtttaaaacaaagtaaaagaaagaata
tctgtcgatctgtgagtgttctgcagacatgtttgtgctaccagataatccgtgatgtga
agtgtgaggctacagaccagaacatgatgtataatgtacatacatccacatcatgtatat
actgtaatgtatactgtatgcgcacccacaggaagtatgtactgtacttggtaattggtg
ttatttttctttcaaatatttgtgaccctccttctgctctgagtgctctgtctgcctgag
atatgttctcctcccccactgtctccctcagctcttgtcttccgtttaacgtgtgctaga
ggaagtagaagcctgccctttctgtctcctggaaaagagagtgcggagactccttgtggc
ttcaCCTCTTATAGCCCTGGACCG
Primer
(+)AGTAGCAAGTGTGTGTGGGA
(+)CGGTCCAGGGCTATAAGAGG


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