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Human element [ hs1719 ]


Position: chr8:32,063,683-32,067,187 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: NRG1-IT1 - NRG1-IT3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
aAgaTGATGGAAAAGCACCTTGTGatttatctcttttggtagcagagagctcatgatcgt
ccatctaactcccacaccatcttggagagccacagggtatcctacattatcctgctgaag
atccttcagtacctaatggctctcgtgaagcattccaaagtgaaagtcatggagcctatg
ccactaaatcagatataactagatacatgttggattaaaaggaaaggaggaaaggcatag
aagggaaaaacagagattattggagaccaaatacctctataaattctcaaaatttgttta
aaggctttactttttcaagatgcatattttggcaatagcttacgaagactgaagttttct
tatttaatcttagagatactaatacttagaaaagaaaagtcttctatcttgttgaccttc
tctgtagccatttgaaatcttcattatcagaataatgcccctccatgtccacaattatta
atttttatagatttagggggtacaagtgcagtttcattacatggatgtattgtgtaatgg
tgaagtctcggctttttgtgtagccatcacctgaatatagtgtacattgtacgcattaag
taattcctcatccctttcccacaacctccacccttctgagtctccagtgtctataattcc
actttctgtgtccacgtgtacacgttatttagcagccacttataagtgagaacatgcagt
atttgactttctgtttctgagttattcatgaccagaattattattctaattattgtgaaa
taaaaattatgcctgactaaaatgactgaatccagaacttcaccataatccatctatctc
ctccgtgagtcagtgcatattacctattccaatgacctcttcagtactgtaaatattact
gtgttccttttatttacttaataaatagatgtcaaatgtgtggaaaacaacatttgtttt
ttcaaatacatgtttataacaccctttggaggaagtaagcctctagaacatgacagtctc
tggggtatgctattttcaggtaattttaaatgtcgctttccaacaaaaatgcaatactat
tatctttttttttaatgacaaagaaaagcaaaacaagtattatattggtgcaaaagtaat
gcagtttctgccatttctcttaatgccattactcgtaagggcagaaatgaccattacttt
tgcatcaacctaatacctccagattttagatatttgagtgccattgcttgatatatcttt
tgttttttcttctggaaattttggttactttagttgcataaaggatgacttccattttac
cctgttaagcatctctgtctggtcagaagctactactctgttctttctagttcagtaggg
aacaatcagtttccttctcaattttcagctaatctttatgaatgaaatttgattaaatct
agcaaaactatgcaaacatcataacagcatatggggagccttcctgtagtaccagtgggc
tatttccgtctaataacagattcaaaaaatccaattagacagtttgaaaaaagaaagcca
gagttaaaaatatctgactgtttgactgagaacagcagggaatggtttataggccaatca
tttatggtgaataggatcttagtggtgagcaactcacatctctagcccattagaataatg
tgttactcatattgctcctaaagctttctacttaattataccaagttaaatagcagacat
tctcactcccttttgatggaaaatcacatttattcacccacacaataccatccttgggtg
ttaagggatgagagttgacctaatgggaagacaaacaaatggtttaggaaatgagacatg
atttttttacacaaaggttaatgcacgagaaaagaaatgcctaggtctctgtctaatgtc
tatgtgttctcatcgaataattcttaaatgaccctatttagtttgattttctaactacat
tagaaatatatgaaacaattaagaaatcattttttacctgtcatatggcagatggactaa
cattgatcagggcagtcgaggaggttgtaaggaaatgggtactctcaaacattgctggtg
ggactatgaagtgttttaattttttttttttttttagacggaggtttgctcttgttgtcc
aggctggagtgaaatggcgtgatctcggctcactgcatcctctgcctcagcctcccgagt
agctggaattacaggcaccctccaccatgcccagctaatttttgtattttcagtagagac
agggtttcaccatgttggccaggctggtcttaaactcctaacctcaggtgatccgcccac
gtcggcctcccaaagtgctgggattacaggcgtgaaccaccgggcccagccaagtgtttt
aatttttaaaaactatttgaccatatgaaaatatagatgttccattaaatatatatagcc
taagaaatataatcagcaatgcagtaaaagattatgtatacggatgctcctgacagttgg
atttacaatagggaaaagctggaaacaacctaaatatttgaaaaaagagaatggtaaata
catcaaaaatacaataaatacagtgttaagtgaaaagtttgtgcaattttgacttgagaa
atttttaatgtactatgactacttggaagaatatggatgtacctcaaaataagtaatgat
ctatatgaaagactgtttttgataatttttgttttcttatacataccttccaatattgtc
caaattttcaataataagcatgcatagcctaatatatcatgtagatgagtgcaaaatgaa
cacagagattaagatcatgggcttttcaatgaaggtctgagtttgaatcctgtctctgcc
atttactagcaatataatttcaggaaataacttaacatctctgctcttcagtttcctcat
ctgaaatataaggataataatggtatctgtgccttaaggatgaccaaagttatagatatc
ttaagaatgaattaaatgcgtttctctccatggactattttaacaatgaatgcctgacat
agcaattatgttccataatcaccattatttatttataaaattatttagtattatttaata
ctaacattctggttttataaaaccaaattttaaaaatagataagtaaatgaaaggacaag
gaaaacctaatttcactgtttttctagctttttttattgctataacttttatatcataaa
tccacccatttgaagtgtatagctccattttactatactgttttcatttataaaagcctt
ttataaatttatacatacctttcagtgttgtttgaattttccatagcaagcattcatagc
atagtatatcatgtagcagggtttaaaataagcatagaagagggtttcgccaaaagatta
tttaagaaaatctactaaaagagggttcttctgaaaaataaaatgtatttgcttttatca
aatgAGCAAACTTCATCCACTTGGA
Primer
(+)caccTGATGGAAAAGCACCTTGTG
(+)TCCAAGTGGATGAAGTTTGCT


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