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Human element [ hs1712 ]


Position: chr3:173,448,118-173,452,132 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: NLGN1(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CcCCCCGCAAAAATAGAATGAAagctacaaatttgcaccacatatgtaattttaaaattt
tttagtagccacactaaaagaaaagaaataggtaaaataggtaaatggccatattttatt
tccaaaatattatcatttcaacaagcgatcattgtgaaaatgagatttttacaccttttt
cattctaagcattgaaatttcagtggtattttacactcatttcagactaaccacatttca
ggttgctcaatagctgcttcaagtagctagtggtcactgtactggacagcacttatctaa
tgccttgattgtttgccttgtcttttccatatgaaatgagagtattaagtaattcatatc
tttttttcctcacacgctgcaaataaaaaaatgaggaaataggcaaattgttttctcaac
tattccaatataaaaacaaaatatagttatttattaaaaggtctttcttttaaatagaac
aaaatgtttaaagcttacttacggaacatcagatttgagcacctgtagaagataataaaa
tctctgatatattctctttgaaaataattgaggaaataatattttctaacttcagaattt
taaagagaaagcaaacgtatcaatctgggcaaggcttcaaagaggccatgatatgtgcct
tgagaaatcccttggccatcaccaaggggctattctgtctcttggagcggctctgcagaa
taattttaccgtataatctgtgactgttttcattccgatatcattcacatagagtcttag
atgacaatttctctttttctagggaaaaatttagtactattttatgcataatgtaagttg
tgttattaccagatttttaaaggaaataggtttttgaaacccttagtttcattttattct
tgagttctgataagttgtatacatttgttaattaaacatgaccatgaaacatagcaataa
aatctgaagaatggaaagaaagatggagttactttataattttgtttctaatattttgta
aaatcatttaaatataagatggactgtattcaatttcaagtttttattttggaaatgcac
aaatcgtataaaatattaggactttggatccaggtcccactaatattgtgagtttcctca
ttatgaaatgggaaatactaccttttctgcagaactattgagaggatgagatgaaataaa
tatgtgataaatagtattgtgtagctattacagcaggctctcagtaaaggttagttatcc
tttcttctctaccacaattactgcttccttttgttttaaaaaattcaggttccttcttca
atctgaaaaacagcatgagaaacatttttcattattgcataaggaaaccaaaaaaagaaa
aatacaaattctgtttaaaaaataattcacctagaacaatattctgtacctataatttac
atagaaatataaatatataaaggagatgtgcaaaatgagatggatttaggttcttgtatt
atgactgagttcaggaagtggtcaaaaaattaaaaagacattttttgtaaagaacaatac
tgctctttgctaacagagtaatgaaaagataaactcactgaggaataaaatcataatcat
tatggtgttaaaatagatgatgtatatttttattaagaaaagtacaaactaaattgttgt
ttacaattattttcaaacatacctctaatataccagtggttaggatagtattttaaggta
gttaagataaaatattatctctcatttaaattgcttaaacccccttcactaggaccttaa
atgccccagtaggacatcttagcataactagatgttttccatcttttaattactatgact
aattttttacagctgagttacaaaaccttgaaaataatgaatatggtgacacattcttaa
ttataatggtgcaaacagcaccactctgatacagtgtgaggcttacattgaaaaggaatt
tccctggaattgaagctcctctgattgctttccacatcacgttttaaacaaacactgtga
tgctttagccatgacttggttgcctaggatacacagttaatgtagccctaagatgctgct
actagttaggctttgaggccgtgtctgtaagtgctgcacatagctgcttttaatacatta
gaaacatttatgtaacagggacactttgcggctgggttcggggtgggtagttgcagtttc
attcatgagataaccagctgtatatttcagtagttacagtgaaaatagttatttttattt
tagtttaggttagtttttctgtgaaagaggcaaaaagtgacggttttttaaacaaatgca
aaattgattcagtgacctaattctaagacacattctcaaagaattaaattttcattgttg
aagaactggaaaaggtaactagctaaattacagtgagtcatttctacaagcctcttcatt
tgatagtgacttttattagtagatgtttatttagtctgtgtggtaaaacatatcagttta
tttttattaagatatttgaaagtttcatgtattataaaattattatgataataaaaataa
acattagcaagataatgtttgtaacagtagttaatgagagtattggtgatgaaccacaga
aatatatacaaatatggtatgtacagattataccttttatatcaaaaattatctttcaat
ttttataacagtacatttttaatgtttttggtttaaatacgagatggaaatataaagctg
gttatacattttagcaaaacaacttaaatctggttttaaaaatcagtagtcttcttgctt
cattcctatgaaaacttgaattgtcttcttggctgattggagttgttgagtgagtgggaa
gatccaatttgaaccagcaggtggtgcttgagttataaatgcatttagaatagatatttt
tttgaaaatcttgcaaaactttcaggaatggttgttcttattttctattttataggggta
attacattttagaaggaaaatctcatttagagcttctgaattatcactggaattgataag
cttaatgccttttcattccttctctctttccctttcccttttctctaatcattgttccct
tttctgcagtagctttcagcagctgtactgtcagggaggaaggatacactcttttctcca
caacagagggcctgggtggtgaaagtggaagatactgttccaggagagcttcaggcatat
tgcctgcaagtgtaccactttttctcctgggtaagattcaaggaggttcctaacttcacc
ttgaaatcttggtgcatgtttatgacaccacttttcaagttcactcttctgtatataaac
catttttgctgtgtattagaatgcagctctcttaatagtgactaatttattcagtcttca
aaaatgcatatggtcccaaaggtaataaaattatggcctttgacatttgtcacgggggag
gaacactgtttgtgtaaaaattcctgcaaaaaagcattgtccataccaccaaattcaaca
agaaaataaaaacattgtttgatggatagtgcattttcagtttagatgtactaaatctag
tgaatgagcataaaacctaaatgactaggttttatgtcatttgacatatcaaatgacaaa
agatataatattaccggttatctagtgttacttctttctgtgagcacatcaagtagactt
tgcggttatattttaattattaaatactaaagctaatgaaagtcctggatgtctgctatt
cctgcagaaataatcagaaagcatcttataattacattttttcattttaggaaattcctt
tattggttttgttaataacatttggttttataatattgatggctttagaattatgatcat
gttaaggccttagagcctaatttatttggctgatcacatttctgacattttagttcaaga
taataaacactgtatattcctaaagtgacatGCATGTTGTGTTTTCAGTCTATTG
Primer
(+)caCCCCGCAAAAATAGAATGAA
(+)CAATAGACTGAAAACACAACATGC


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