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Human element [ hs1696 ]


Position: chr9:22,116,987-22,119,574 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: CDKN2B - DMRTA1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAAATGGAAGCTGGGAGTGTtgaaagaatgtaaggggaatgacttctaataatgaacaaa
aagctgttattttattatgaagaaaaatgttatgcatcttatgcatgcagaagaaattcc
cattcaaaagacttggaaaatgtcttgggtgtttactataataaaccttttaagatatag
aaaattcacatatttagagcttaatttctaaagagctcagacttctcagtttattatatg
ctatgaaattttgtttatttttaatttaacctacttgtgtgcaaaatcaataaggaagct
taaggaatataaacaactatttaacatggccatttaaatagattcaaagtaaagaatatc
agcatagtgtttctttgatatgacaacccctcctcccagggcacttaaatgaagggttgg
gggggaatcttaacctgaaattgaaaaccctgaaatcatgtttccaaggaaggagaagga
aaataggaaaaacaaaaacaaaaagcagcaactcatttggaagctcgtgggagaggagag
gaggattcatacatctcggactggtttgccttagcaagtgaatcatttaaataggaaaaa
acagggggctgactcagcttgagcaaactcttgctatcccctgctgaggtccgcacttgc
tgtggcccctgccgctctcctcggaccttgctgccctcctcctttgtcactgtggagaaa
caggaaggaatgtttattagcaagactgactggggtcacacccaaggcaatatcaggttt
ttacctctcccaggcctgggaagaggttcaaggatcaaggacaagctcccggttagagtg
agaggcaagttcaaacctttgaaaaataaactcacaaccagcatttggcacaggcctctg
gagtttacagaatgtatctgcctgtgtgtgatttcattagttcctcctgccaatctaatg
agattttacgtcctgtaacagtgaggcaattggagtctcagcagggaaaggaacttgcct
aaaactgcaggatgggtagcgcttggatcctgactttctgactcctaggactgtgctgtc
ttcagatgatcacatgccttcttggcagatgtttctaacaaaggagagagttgcccaggg
tggggctctgctagctcccttgtcatgagccattctctccacattgccttttagttgcac
cacatagtcaccttcaattagctgtgcgaataggctcactcttatgctaacatgtactaa
aagtgaaaatggggagagagagagagagagagaaagagagacacacagagagagagactc
atattatggtatgttccctgccccaccccactccactccctctcaacagggagaaagtac
ctgaagaaaatcattgctatgaagggcatagccagctaaatgggtgtcacttagtctgaa
aaatctcaaagatgtcaataagccactcgagacaacaaggaacctgttttcctgtcatca
ttccttctcagtccttggctttgggaagggtaactttatggagagagaagaacctctgtg
gagttaaaaggtttatgaacttttttccctgcaacaaatcagtgacagctgttccacagg
ctgatggttttccctttacctttcgttttttaacagctatgtctcacagtccagacttgg
agtacaagtaataagaagaataaaacttaatcccttaagtagattcaccataagttagct
cagagcaattccagtgcaagtatggtctgtgatccagtaggtgagtgactctgctgctga
aattcacatgtatgtgaatttcacagtggcctttgctttgtagcatgctgtaatcctttt
gtccattttcatcacacgaactgctgaatataggattgttaaatggatggggagatatca
tgaaaatgattaaagaagaaagttcttatttaggggtgcatacctgcctatctgaccatt
gtacttaggcaatcgggatcttgctttaagaaaaggtaggcattggagtcaggctgctgg
agtatgaatcactatgctatcatttttcatttgtttttgctctgttacattaggaaagtt
atgtagaattttgtgcctcagtttcctcattcaatatgggtgtaataactgtgcctgtct
tgtaggattattgtgaggcccaagtgcaataatatatagtacactgtgtctggcatctag
taagcattcattaagatgacatgaagataacacagatatatcttaacatgtaattatgat
tttgcttattcaaggccaagcattccaatttaatggagttaggcaaacacagtaaattca
ttgctctttcctttttatgctacttcctttgaagaggcagtcaagttccatttgactgat
tcggaactttttagcaatgtatattatgctgacttcactcttatgcgctcttggggctat
aattcatcaagttaggcgagcaaagaagtgtgttggtgaaagagaaatgaggaagaacaa
ggaagaaaaaaagggtcatgagcttattcactgccaatatttattataTGGAACAATGAC
CATCCTTC
Primer
(+)CAAATGGAAGCTGGGAGTGT
(+)GAAGGATGGTCATTGTTCCA


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