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Human element [ hs1695 ]


Position: chr9:22,127,677-22,130,448 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: CDKN2B - DMRTA1

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAGACAGGAGGGTCCCAAATacgaactttgacttaacgaggatgattactagaagggaaa
gattgtggattcattgatgagatgttgaaccatgaaaactctaattgtagaactcacttc
agactgaattgacttggctttcagtagcagaagccctttgtctacttctctagtattgaa
gtgaatgcaaatttctcaatgtaagaaaagtagagtggtgaaataagagtgtgggttcca
gggtcagacaactgggtgcataaaaagggtaaggatgctacaactggtaagccctgtgag
aattatttaatccttccatgtctcattccgctcatctggaaaatgatgatcatactaact
tatgagatgtgtgtacagactagatataatattaaaacatttctgatacctatgcattat
attggatcaatatatatttgcaataaatgatcaactttttattaatgaagttagtactta
tttcataacgagattgtttacttctaatttactagtattgtcattattactgttgctgtt
atactgctactgctgttgctactaactctttatgaagtacctaatatgctctaagccttg
ctctaggtgttgtatatgaagtatttctaaacctgaaaactatctaagatggctcagtct
agcccattttatagacgaagactgaagccaagagagttgaaataatgagtaaagttgaga
tttgactttgtcttccaaacaactagaagcataaagcaatggaccaggttccaaagtgac
agggaggggcattagtttggcccataggctgcagagcctgtgaccacagagccctatata
ttccagtggtgaattatgtttgggaatgtggcagaccatatggctatggcatcgttagac
atgaggtggagagaggcagatgtgtggttactcgattgagttgagagatgccatggaaag
gaggaagaagagcctgagagagcaacttcactcatggggagagaagcttatgtggagata
agcttcacttcactaatggggagataagcttcacttatggggagacaagtaaggaagcag
ggatctccagaggatgtggagtatgcctggtactttcattgttctttttccttattcttc
tttattcttttcattattttacctaggttagatgttaaacacttcctgttgtttagtcag
gcttccttttctaattataagactaaacactaagatttcatttgtagatataattattag
agaattttgataaaatttccaagcagtgttccctctgtttatcatcgtgttccctgctgt
tattagttcacagtttggtctggaattactccagttaatcttggggtttcaggagagaaa
ttgtgctcagggtacatgagaagagaaagtttagaaagcgaagggcttccctgtctagtt
tctagctcagaaaagcaaagatattctactttcatatgtatgataattggagctgagctg
actttaaaaacagataatttttcttttttatccctaataaataatggtgcttacagcaat
gagtgttgctggtaacagattccaccaatgggtgtggtgtgaagtttagcatttgtggat
tttgcagcttctgctattgtctacagcatttcctctcttgtctcggaggttcatactttc
tcaggcaaggacacttttaactccagataaatgtctgggttttctcactccaaggataag
aaggtgggggtgatggagtggtggtggtagttgtggagttgtcttcctggcagggatttc
attgtgggggaaagtctgtctttagaaaagaaatgtaaactgggcaagtagtctcatcag
ttaaatgatttccttgttgacataaggtgaggaaaagaagaacaacttttgggaaaagta
actgtgagaatacaagggaagaagaaaaataaggggttgaacattgaggaagacttatga
gacagataaagtataaaggcaggtaatttgttctttcaatttggcatggggacagtaaaa
attttttcttactaaacaaataaagcccatgtatttcttctgctctgggagcaccaatta
tattgagcctctaaataaagaaagtcaacatccacaagtgttctaaattccatctcgtag
tgagagtcctgaaaattgcaatagctagagtcaatacttggagtatatgcataagacgtg
gtgtctcaaataggattaaggcctactcttggcatcttctgttattggtgttgtttctct
gtattgattggtataacgttagacaaaactgcaggtcatctttgagaaaaactcagtata
aacaatgaaaaaaatgtgtagctgcacatgtaatttgcatgtaacaaaaccaaaggatgc
tttagatagtaacagcagcctgtactttactccaacccattagttttatgataaatgtgg
tctggggaagtgctcgatctaggttgttcactttgtgtttttgtttctttctatcattcg
ggtgttgagtcacctgtttgtctgtgtcagtgtcagagcactgggtcacatcctgcattg
tccaggttttattggtccctttcttaaattaaagctgattttccacttaaagagaattct
gtctccttctgcaattgttcaaagtctagcatctcaagtgcagactctaaactgtatgta
tatgtattgtgcaggctatctatcttcttagctttgaattctctagaaataTTCCAGAGG
TGTGATTCCTCT
Primer
(+)GAGACAGGAGGGTCCCAAAT
(+)AGAGGAATCACACCTCTGGAA


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