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Human element [ hs1689 ]


Position: chr11:86,606,894-86,609,999 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: OR7E2P - FZD4

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
aAatTCATGTCAATTACGGCCAGAtatgaagatgaattaacaaatgcatctgatcagtcc
atccaaaatttcagtcaaattatcaggaagtatataatttgtataacacaactaactgtt
catctttctgtgaagtgtactcacttcacagtggggacaggcttatggcagtagctgtac
aactttgaaaatctgcctttgtctcttatttattttgaaatgggggtctttttaaactcc
ttaaaacttgaagtaagtctcagagaccccaactaaaactaccaattaagtttgcacagg
aaattttattttccaaatgtaattacagggcagatatttcaggatgtatatatgtgatag
tattttaataatttgttgagccttaaggtacagtatcaaatactgctcattcctaccagt
ttggaggggaggggtggaaaagatagggaagcagaatggaatgacttattcaactttcca
attctttaatatagcattgacctttgtaaaaaaaaaaaaacacacatatacacatgcaca
taaacaaggactcccatttaccttattttccattttaaattatagtacccagtcattcgt
ctttgtcacgatccaccaaatagttttgtaagaacgtgtttcatacaagctctctttcag
catcagccaggaaggttaaggtttagatcctgcatgatagaaaccctttttgtaattctc
ccccaaacatctgttcagtcactcatcattaacatctgtcacccatttctgggctcaacc
cagacaaagctatgtttttctgtttatctaacgaactccatttcaaattgttaccaagtg
attcctactcagactaatcttacacaaggattgagaagatgtcttcttggatcaaattca
tcttccactaatgcagcgtctaccctgaagccttggcaaaagcccaatggctcagaggaa
gggaaattcttcataacatgctaacactttcctgcctggaaatgttacattgaaaacttc
taattctctttaactttccagggttaacaaaacgccatcctatacatcttatacatatgt
atatctttaacttcagcccatcatttaccctatacaagccccagcagggccgctttgcaa
accagctgaaataagaacataagaaatgattttttaaatacatggcccaattatttgcat
aaaatggctaataaatattggttcatttggaaaggcaatgcaatgtttaaaaatatgtag
agagacctgaattgagatcttggaaaatcacctctaagtcaggtaaccttggatacttta
gttaatggccctgggccctcatctacttaaaggaaaaatggattccttatagaattaaag
agttaaaagaactgttgcacataaagtgctttttttattttaaatttcttagacagagac
agggcctcactatattgcccaggctggtctgaaactcctggcctcaagcaatcctcccaa
cttggcctactctcaacgtgctggaattacaggagtgagccaccatgcctggccaacata
aagtacttgacacagtgcctggcacatagtaaacaactcagtttatagtaactctttatt
tatttacttatttaattgagatacaaagtcttgctctgtcactcaggttggagtgcagtg
gcataatcatatctcactgcagcctcaaactactgggctcaagtaatcctcctgcctcag
cctcctgagtggctagaattataagcatgcacccctggctagtttttttttgtttgtttg
ttataaatactgggtcttgctgttgcccaggctagtttcaaactcctggcctcaagtgat
cctcctgccctgggctttggttgctgggattatggtgtgagccaccacacctgaccagtt
tatggtaactcttgccatcatcatcttcaaagaagaaaaagagcagaatggttttacctt
gctctttgcgctcagcatctcctttttcttatttctgtttaaccagtatttattgagagc
ctcttatgggctaaaaactgtgccaaataacatgaaagaggcaaattccttgtcctcaag
gagctctccctggagaagatagatagatctagactctacttcgaatcagatgctagtaag
tgctctcattttaaaagtaacattccccacagattacttgaggatgttttaacaccaaat
ctctgattttcttattagaaatctttaattggaggctcatcttacacagtaagtttagga
atttaaaccccagggcagatatttcatttcgatgagaacctaatggttataatctaggtc
agtgtttataatgtcaatagtgcagtgaggaggagaagggttttcacctctatttccatg
gattttagaaacaatcatagtgaagaaggcccctaaaactgaaccagatgggacaagtga
attattataacttatttatttccttcaataaatatagtataaaaagtatttcagaaagct
cccataacccattagagtctatttgatatataaggatgctaaatattaatgttgatattt
tttgttgaggatcagaatgccaaggactcattttctgttgaatgtagtcaataaggaagg
agtctctttgagaattccattatgaccatagctatttgtcactttcctcattgtctgggg
aaaggacaaatgaagcggagcacctttcagagctacagttctctgctgttgttccttcat
gggtccctgtccttgggacatatgtcttgtgaataaaatatgtgtcacactgaagatgtg
ataagtgtgctgagaccacacaaagaaactgactccatcagcagagggtgatggggtgag
cagaggctttccaggcagagggaattgcatgcggtgtgcatatctcttctctgaaccttc
atttcctggcctctacatggagaaaacaaggcacacctctctgggtgcccagaagcactt
acatatattgtctggtagtcatgggcactcatctatgttaatttgtttgtggcacagagt
tactggactaggtagtgatcagaaacCAAGCCCAGGTATTCTGAGC
Primer
(+)CACCTCATGTCAATTACGGCCAGA
(+)GCTCAGAATACCTGGGCTTG


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