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Human element [ hs1687 ]


Position: chr15:48,012,796-48,016,252 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: SEMA6D(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTAAGCAGGCCCCTACATCAatgtcgtggtttctgtcgcttgaaaggccacaagcaagta
aacaggaatcagagccttgattcacaaagatggccataattgctaaagacttattgaaac
tggagaagttcttcacttcttgctgctccatcataataaaccttggtaattagcttagtc
attgttcttgcatgtgagtttcactaagatacaaagagtgaaaaatgcatctgaaatagg
gtcatttttcacccttttgatgcattttatgcagagttaagagcctggctgaatgcctaa
ccattagtagtgtaaccgtaggaggtgaactctttccttgttatattgcgtgataaaata
ttgtcttttattttaattgatagactttaagcctgcatattctagatgcctttctagagg
aagcaagaagcagttggggtatgccaactaggcagtatttactgaatatttatcatttgc
aaggagctgtgctagccagtgttccaacaccaggtgagccagatatgtttctctgtattt
tcaatagagcaaaaatagaaggaaataaaggatgggaaaacagaccttttgacaagaaat
gtagatatgcttctttctttagaagtgtattattttattctagagattttaaagcaagat
tatccataccagatatttgcagtggtgcagcctacctgcctttaacactagtgaatgatt
caatgtactgttaagtgtaattcacgcattgaatctgtccttagagtgagagatctcact
ttctgtggctcatgtgaatggagacttagtgttaatatctaccaaagctagtgtcttggg
ttgccgctgattttgtgaacagctgccaacttccaattggggaaaaaaaaagtgttctga
tttattcccatgacacacggagagaataaaaatcacataactattttaaacataccataa
cactttctagttgaggtggctattgtcaggtggagttttcctcctcacacctgacaacac
tggcagtgccactgataattgaagctgcttgcatttctcccaacaggaaaactactagac
gttcttactttgaaaaacaaccatttatgtaaccaagggcgatcaaatcagtggtccaca
cagataccacatgaggtgtacttatttctcaaactttccttttctattaagcttttgtta
actcacccagattagcattttaacaaccctgaagtgaacttctgccattctctctgcttg
gacacagtatgtagatcatccatcatcctgtccttggctacaacaggctgctggctctat
caccatttggagctacatggaatccatccggctgtgaacagcacagctggctacagcaat
tttttcttctataccactggcagtattgtctgcctgtggtaactaaagttaacacccaga
acgggaagtttccattgtttggcaacctgtcccaggcccctcatccagttctggggtcac
agctactgaaagtccttgccaccttgcaatggtgtgttccatttaaaaggaggcttgccc
caaccttataccaccacaggaaagattcttgaggcctgtaagatcaaaccaccagaatca
cagaattagaaggagccattcagccaccactcatcttacaccttcagaacttgagtctac
ttgaaaaggggaagaaaggaatgaagtagccttcagcctgtgatcccaaatgactgaaga
tagaaaaaagaccttttttggtgaactgagcaagttattgctacatcccttttcacaaag
aacacgcgatgtacctaaatatggggcccgtgtgtactagtgccgaaactttctgtcgct
ttttttttgttttgttttcttctttttactcaataagatatctgttatagtagccattgc
ttgttaaagcaagaataacatgaattagctggctacatctgtaggttatgttgccaggct
tttttgtttggatgtttaaactttcataattaggaatccagtttttggaaattgatgtgt
caaggggagactgcctcatgtttgggtgtgagttagcatgtagtctttcttctctccata
acatttactagtgaaatcagccacaaaacatctgaaggatgatggtgatgatgatggagg
cggaggaagaagaggaaagaacagcagcaaccacaatacttaacacttaatgttagctta
ctaaattctaggcaccgtcctaagatctttatattggttatatcatataaccctcagaca
gctctgtaaggtgaattctgttattatcactgctttattggtaaacaaagtgaggtgctg
agaagctgtcattttcctgaggttacataatggaaaggtggtaggggcaggatttgaact
taggcttcccgacatctcagcccactttttcaccactgcaccggattgcttccaagaaca
cagaccaccctgcagttttctgacttcctaatacttctgacatttgcttttcaatgaaaa
agtcatgttttgggggaaaattgcgtactgagtgaaattatatgtacacggtggatgtgc
tcttaaattaccatcttttttctaatctaaatcacattgttatactttactttcattttt
tatttccattggccgtataattattacacacccttcttttcaagcatcctagaacggtat
cttctcccaccatttttctccatgttaggctttcctgtccaagattacagtggcatagga
caaatggcaatattcatcactctccaccaaaaagtgcttctgcgtccgggtgtgattgac
attcatttccctgatcttggcaggtgaagatccattacgtatctttgtcccatttcccgg
ggggaatttatgggccccatcagcaaagacagtgagagctgcagctgttcaagcattagt
ggcaccagtatggaaagtgtattactgaagttaaagtctctattagattgtactatacat
ttttcttagttatgatggagggaaaatctttcaatcagatacattgttgagaaattctct
ctcatgcatcagcatttaattctctctcatgcatcagcatttttttttgttcttttttta
ttcaggatctctatgagaagaaacaaaaagggaaatacacatgaccactacacataatac
tgaaatgtaaggttctcaacatatatttacaggaaggaatatgggtttttaaagcccaat
atgttggtacatatataataaggcctcaggaagatctgcaattacttagcctattattgg
agtctgtacttaaaaataacgtcaggagtttctactcagctgaggaactggcacataaga
accagagcagacgaagctctttgagaaaataacacttctactccccaggagcaggctgtc
agcaaagcagggacTGAGATTCCCCTCTCCACTGGcc
Primer
(+)GTAAGCAGGCCCCTACATCA
(+)CACCAGTGGAGAGGGGAATCTCA


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