Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs1685 ]


Position: chr3:112,811,494-112,816,407 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: C3orf17 - LOC101929717

Timepoints:
e11.5

Expression Pattern
eye (11 out of 14 embryos) 
facial mesenchyme (3 out of 14 embryos) 
forebrain (9 out of 14 embryos) 
hindbrain (rhombencephalon) (10 out of 14 embryos) 
limb (7 out of 14 embryos) 
midbrain (mesencephalon) (12 out of 14 embryos) 
neural tube (10 out of 14 embryos) 

Embryo 1

Embryo 2


Embryo 3

Embryo 4

Embryo 5

Embryo 7

Embryo 8

Embryo 13

Fasta sequence
GCACTATGTGGGTGGTGATGgggtgacaatataaagtagctgcagtttgcagacctgagt
cctgctctgggcagtgtcctcccgataaagccccagacttcaagaaatacatgcctgctg
cctgaaatacatgcctaccgccttacccttgggctgaggaaatctctctgagagtcacat
tccacccactacccccctcacttgtttccatcatattactctcttcctgggactcctctg
ccttcctatagatgtctggatgagacgatggaagtgtctcactgcttctgcccttgactc
ccctacacaccctgccctaggccatgccccaggagacaaaggaactggaactgtgtataa
ccccggggctaattgccccagatggtgttttcctctgtgtcatcctctattacctttact
ctgtctttttttttttttttttttttttttttgagatggagtttcactcttgttgcccag
gctggagtgcaatggcacaatcttggctcaccgcaacctccgcctcgtgggttcaagtga
ttctcctgcgtcagcttcccgagtagctgggattacaggcatgcaccaccatgcctggct
aattttgtatttttagtagagacagggtttctccatgttggtcaggctggtctcgaactc
ctgacctcaggtgatccgcccacctcagcctcccaaggtgctgggattacatgcataagc
caccgtgcctggcctactctgtcatctttcttaaacccatctagagaaatataatcgctt
taagcattgtatttgctattgtctattagatctgtcattttcccatcaggttttttctaa
gtgtatctttgttttgaatcttaaggaaggcttggtacttaaaggtagcagaccagaaac
aggcaaaccattttggtgtgatgctgggttctccttaaccatgagaacaaccaatagcat
cacatttttaaaactttattcagtcattcattttcaatacatgttattgagctcctattt
gtccatggagtgcaacaaaactcttattccgtggagtgcaacaacaacaaaaaaattgtc
cttatgaagactcattctaatggaagaagcagtcaataaacacataaacatatagctaaa
taatactatttcagataatgtgttaggctatgaaaagaatataataatgggaaagaacaa
ctgggtataaattgtgaccctttaccttgagaagtcagggaggaactgtgttttgtgtca
tttgagctcagatataaatgattagatggaggcaactattcaaatatctaggacaggtgt
ttcaggcagtgatgacagcaagagcaaaggtcctgaggcagatcctgttatgataaacac
ttggggtgagtaaggaaggggagagagggagaaaagatgactaaaacaagcacttggcct
caagtctctgggagtcagtggaatgatctaggcatgataggaggaagagggagaaaatat
tggaaagtagagaagagagagcaagaggtaaaggaaagaaatcagaaagacataagagtg
gtaggagatggccaactacaattcactgcccaagccactggccagcacgagtgcagcggg
ctccctactgggagtctgtgaccaaagagagtgtgtttcttctttggagggaggagagct
gcagaaggaaaatatactaataagctagaggcaaagcaggcccttagtaacaagaaatct
tctgaagagagaacttaggaatcagattctagcaaagatataagctggaattttcaagct
ctgttattttcagaggttataaggacatctcagagcctcctactctgagagttctcacag
tcctgggcagcattcacacaaacaggtcggtgtatgaatatatgagggtatgtgtatatc
ctgtgtgttgagatcgttgggggtgcctgggcagaggaaaagaagaagggaaggccatta
aaagccttgctgagaaaggtatttcttgtggacaaaaaagaatcaggcccctcgctccct
actgagcccatttctcctgcctttacccgagctgtcaggcatgaatccctgtagcattcc
gtaactaattgatagtaatgggggccattgggagtctaagaatacgtggcattacccggc
atgcattggaaagaaggggggctgcctcaggggcagctgtggagaaaataaaggctgcat
tttcaacttttttttttccttaattgaaggtaggaggtagaagtagggaggagcagattt
aggcaaacctctcctctagcttaaaaataaaaaaaattgcaaatctcatttcttatcctg
agctaatatcccaggatactatgtctgccacacagaagaaacagatggaatttcaattaa
ccccagggccccctgtgaaatctatattgtaccctctggatttacaacacattgttaata
tatgactgcaggctctggagattccatcacaaatcaaccccctttattccagaggttcag
aaaactactacaaaagcccacttcagaatcaaaagtggacagtttcttacaacttcatct
tcagagttgaaacccaattttaattttataacagtttatttactgagcagtccccatgtt
tttataagagaaaacatttattttttttccttctatgaatgatgataatgacagactaaa
actatttatgccaaaaagaaaattgggaaaagatacaccattaccacaccttgatgaatg
attcaccataaactcacagtcaattatcatccaaaggatttttatatttaaaaaaattat
gcctttatagaatgtagtctttaatactaaagatatttgaaatcaaaataaaagcagtta
cttttcctattaatatcacatgaagttgtaaattttgcaataatgttaagaattccaagt
ggtttttcaaagtcaggattgtttataaacctatggttctgacttttatgtcttttatta
ttggcctcacctttctgaatttattcttcatttcaaaaataatatttgcataagtcttca
acttctcacacccacaaaaactttcaaaattaattttgacctttcgatattatggaaaaa
ttttctgtgcatttttcttacaagactacttttccctaaaattatacgtcaactcaaatc
ttgcatcaccttctgcagagatgaattgtccacattcagtagtacagactccttttctct
ccaggttgctgttgtgttatccagcttattttacgaaaaatttgcctctgaacccctggg
gactatctctaggaaattagatcagcaaacttcctgtattttgagaaaaataactttgga
gaattgaaatgtgtctttttaagggattgcaatatgatgtgaaggctcctcctcattcca
aggtaaccatgagggactgaggacataggctgccctcagaaatacaatctattagactca
gagatgttgagagctgggcagagtaaaaagagccatcattcagacagctaagatattgtt
tgtccccactttgccatttcatgaaggtaaataaggcagtcactggaatgttcctctcca
aattgtcagaacagaggagttttccagcctgattttctttcctccaccaaatgcacagcc
tcgcaggaccactggggaaacttctttctccctgtgtctaccattgtatagctaggccag
caggggccatgacacagtgagagcttgtcaaatcaaacagagcttggttgtggcacaggg
actgggggccaccaaggaggttcaaagaaatggtagatttgttcttcaggcaggttagga
acattggctcagaggctggaagaagtttcttctagtggaacaagctcctcttatttttaa
cgaagttggtttatacccttaaaccacccttaaatcagaaaaaaagtggtgattttaaat
aggctgaacatttgcctgctttggacatcttaatatcaggcaatcagaggtcattttgat
gcaatcattgaggtttatttcctcatctgaacaaaaacatggatttgttattaaacccag
actagcattcatttaacctgtctcatttccatcttagatatcatttattctggaaagaaa
aaatatgtggtcacttaaaaataatatacaaaccacatgttaagattgactgagtttttg
tttgcttttttaaccttttgtgtgtgcttattatatataaataatagaagtcgattcttc
tataatactttctatgtgccaggcactattctaaatgctttatgtgcaataattatctaa
taatcacaatagtcatctaataatcacaatactgtatgaggtattattatcgcctttttc
caaagagagaatattaatgacacagtatttggaatatgtttgcttcttagcctttagagg
ttatggcagggatcacgttttctgatccctgatcattcacagaattgaaagtgacatctt
tcaaaacatagtcagtatggttcctcttcttccttcccatcccccttgcccaccacctgc
cacctctccttctagtctgtcctgaattctgcactctattttcaacttcttatttgaggc
tccttcacttgcagtcttcctgtttttatttttgtgctattaatttcatgttccaacacc
accagaagttaaggcaagatgaaagaggaaggaaaggacaatataggaggtattctaaag
tcatctggaaaacttcattattggattcagtaggaaaagtatactgacgagctcaattga
aaacatacatgattggtgaaattttttgctattaccttaccttttccttacttttttttt
tctgggttggttttactgttttaccatgattTTTCCCCGAGATTCAAACAGaaa
Primer
(+)GCACTATGTGGGTGGTGATG
(+)CACCTGTTTGAATCTCGGGGAAA


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.