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Human element [ hs1682 ]


Position: chr16:52,740,114-52,744,871 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: CASC16 - CHD9

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CtgaGATTCAAGTGCTCCCCTTCAagagttaaagggccttcaattttagaaaactaatac
cgtgtttcaatcaagaaatgttagtttgttgcacgactattatgtgccaggcagactctg
tgctacgtgcttagaatacaatgaggaaaaacagacacggtctctgccctgatgggatca
gtctagcagatgaggcagaagaaaagcataaagagcaaagcaaaacaaattataacctct
aattgcgcattgtggtcaatgctatgaaggagaggaacaggggagatctgagagagaatg
agagacagctgtttttagattgagtggccaaggagcaagcacaaaatataatctcacaat
aaatatgtagcaaaagtatccatgggcatcatgagcaatgagttgctcaaatgcaaaagc
catgtgtccatggaggagagatagggcagagaagttattaggcaaccttaaacatcatgg
cagagatagatgcacctgtaccagtgttcaagggaatggagaagcaagctgagattctga
aattaaatcctttctaaaacattgctagcaaagttcaaaaaataaagatcttggagaaga
ctggagatgtcaggaaaggctttgagaaagagaagaagaaatttaggtaaggctgagaag
gataagaagatgaaaaaggtcctgtctctcttctggtccaagacaccaccatctctagct
atgaccacagctccagcctgctacctgctatcctatgcgaagccagaatgaagctcctac
aatataaatctggcaatgtcacctcaatgcttaaactcttccgtgacccctactgtcctc
aggatgaaagctgaactccttcatatagttcacagagaccctcagaatctggcctctgca
cacttatccagccacatctcttgaaagtccccacaacccccctctccacactagattatg
tccacttacaccagcttccttcagttccatgaacatatgatatgctatttgaagatgctg
ttgcttctacctgggttactctttagccttctacttgactacctacctcctgctcctcct
tcagaggcaagtgatgagattactgctctgggaagcattctctgagcctctgcccaggtt
tggattgaggtcctttgcatgtgttctaacagccatagttccctcatcatgcttcattat
aactgcctgtaacagatcttaagctctgtgaagtcaaagcccacatgcggcttgtccaca
ccagctcccaagaactagcacaggtctacttagaaacaaataaagagtgagtgccaacta
aattgttgaattacattgctgaactgaaagtatctctggccagtggaactagatcttccc
cagaaagatgatattggcatcccattggctgatcacaagctttatcattgaaatcatctc
catttggagataagtcagcctcccagatgtaaagatggcccaaactaaagagcctccaag
agatgaagcccagagttctattcacatccaggaagaagtttaaagaaggcaagaaaatgg
agaaagcaggaaggggtctttaagcacttcccccagtaatgccagccttcacatcagaat
gtccgagaagagcacagctgccttccttcccctccccccaagttatgatgaactccctgg
gtcaggattccatttctctctcttggaattatttatggggcactgggcttaaataaagaa
tcccctcttttggaggaaaccattgcatgttccctcaaattttttttaaacatttggtgt
atggatcctgtttttaactaagctccagtctgcaagtaataggtgggttttctttcatgg
ttatatcatcctaaagcttattcagatgtgataacgttttgctgctgtatcttggcaaca
tgatttattctgcaaatgctcagtgttaccgtctcacaaagctgtaccatctgggttgaa
ttaataggctacccagagaaataaatgagaatggtctcacataattaacatgtaggtaaa
gtatatttaacagattattataattaatatgtcagttactgatttcatgctaaatagaat
tgtgaacacaagatattaagattagttaccctttctgtgtgtgcttcaaacaaaatgcaa
tggggaaaaaatgagggcatggagttcagtatcaataaaattgaccttaacattaagaac
atcagataccaaaactctaagcaaacagtgacaatgtcagacattataagctgggagcag
caaattactggtttcataaatttagggtttataccagagatgtccagaatatcccagatg
tgacctgcaaaggcagaagaatgtgcttaatttatacacagctgaaggcgcctatctaaa
ggaagggggtggtggggtggggggaagggagtggaggaataaagacaaagaaagaaacca
gatttgctcctaatgccagcctgagttccctgctgctctccactgtatgcaaaatgccag
tttgagtgagaaaaaccacaaaggagacctagaggcaatggaaatttagggggcaaaggc
atccaggctgaatcctcaaggggagtagagagagggggtttgtgttgtcaactggcatgg
gcaaaggacaaggcagtcggggttggggagacaagagaagatgcttccctgtcctttaac
aggtcttttgagtcaaattcgtctattaagattattaagtttttgtttctttcaaagctt
ctgggaaaaggagagattcatcttggcagagattctcatggggatactgaacctaactgt
taactcacccagccacacaagccactctttttaatccaggttcttccagctttcctatga
taagtgtgtatctgtttcactccacagtgatccagcaataaaattttttacatgtgtgtt
tgtgtatgcgtacatttgtgtgtaattaaagcaaaaataggaatttgttttcatctctct
ggggttccctagtcagggaagtatttttctggacagtcctgtgttccctgctctccacca
ccacccagtgatcagaaactctttgggaatttgcttatttcctcactgactttgagtctc
taggcttggatttacattataattctggttacacaggcttgtccatgttgtcagtttctc
caggggaaaatagcagaggcttcattggcctccacagtgagccacatttctggggaagct
tctctaggggatgtgcctggtctcccatctccacccagcagagagcagtgaggagcctct
cgcccagtgtgtctgcttccagggctccctaattgatgaacaaatggattcatgaattct
ccaagctgagccttcgttagggagtccctgaggacagagttcatcatgtctccaaaacaa
tcaggccattcgaaaaatggcagatagagtcagaaagaatatatctcccaagaacatatc
aagttcagccttgaggaacaggatgaaaagaagcttctctattgctctttttctcaatag
tacaaagaaggaggcaaatactgtcttatcccagaggatgagggtggttatcagaaagag
gagccatcaggttagctcaagaaaaaatggggatttgttggaatggttggaaggctcagg
gaatccaagaataagaagtgctctggatctctggagataattctgacataaagggagata
ctcgctccagctctgtttctttcagaagcttcatggtttgcttccctgcttctttccttt
taccagtttaattctcgctttctctgcagtgtggtcctctctgctccatctcaccatggg
ttccacctttgtaatgctttccaattaggctgccctaaaaaacctgtcctgggtcatgac
gttacaaaatcagcaccccaagagaggatctgattgactgagcctgaatcagggcttcag
tcctggtccaatcagctgtgctgggagtaaagtggtcacatagttcactcagccggggtg
gaggaaacaacgctacaggagggaggagaaggagatggaggcaaaatgattaacagcatt
tgatttatttttttatcccagtgtcctgccaactctctgctgcagtttttaaggaagttt
tgtcgtcacccagcttgggttgattcgttctggcttctaaaataccttttcaaatctact
tttcatttaaagtgtttcccagacataaaaccagacgtgtacaggagaagagaatatacc
taactggcatgttttagagtcaccacgagagaagggtcgccgtatgtgtttttggtgacc
tctggtatctctaactctggccacagtgcttggctcatagtaaaggctcaaaaaatagtt
gttaaaggaatgaaccaattaatgagattttgtcaaaggctgtaagccttcagcctctcc
atttcaggcaaccattcttctggatcccatgtactcttaacagacagtggtttcagactt
tggctgtgggtatcgctgaggatacaaccagtcactgcttgttgggcagtggctcccaag
ccccagctgatgtctgcaggtagccagcatgtgttcagagggcagatgtgcacggcttgg
gaagctggctccaaatctgccacaataaacctaagccctggaccgctcaagggaagacgg
gactcagaggagctcttgaatataaaggaggctccagcgggagtgtgacaaccagtacAA
CCAAGAAGGCACGTTGTC
Primer
(+)CACCGATTCAAGTGCTCCCCTTCA
(+)GACAACGTGCCTTCTTGGTT


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