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Mouse element [ mm1681 ]


Position: chr13:15,436,322-15,439,866 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ATGCTCACACCCAAAGCTAGAaaccttgtaaaactgaagcatcttctgaaacaatcaggg
aaagatgagacgagagaaccaacagtaaatagtgaggagtttgcatggctggattcactg
agcctactgcctgtcactcaagcagtccctggaagtcaacttttctcttaaactcagacg
taaagaactggaattacatacttctcacagatcttacttcccctctaggaatcaaaatga
aataaagaggccacaaaataaaaacaggtgagtaaataaaaaatagcaaaggaagattgc
tcaaaaaaaaaaaaaatcaaaatcaatgtgaatgcctagaccacattgagagacagagac
agagacagagagagacagagatacaaacagaggaagaggaagaggaaagagatgaatcaa
cttactaacatacaactgtaaattgtccttttcatctgctgtaaaggctcagcgttgtta
agaatgggaaggatagagcagcttgccctagaagtccaaactgctaatctgtgaaatgtt
ttaatctggtaatcataaaactgttcatggccttgagcctgattatccttccaagaatgc
atccttaggaaataaaccgaggtgcatttgaaactgagcacaaaagccatccatcatccc
cacatatgccgctgctcctgtcccagtcctcctggggtggcttctttatcctggctgtac
agtaagcaatattctagatctgctaccccccaccctggaaaccaggcttttcaaacacac
tgaaggaatccagatgttctcctgacctccagatggtctaaccttatgttccctccatcc
ccgccttgttattttaagttaagttctattagcagctttcttcatgtgtttctgccactt
cgcctgtacatggatcctctcccacttagggtgagccatgagttggccttttctttcaat
tcattctcttctaagtgaaattcttggagatttcgtgtgcacatttcagcctttccaagc
atcagcagtggtacagggtcccccctcttttatttttatatctatcagtcattttaatgg
ggatctggaaggaaaggaattggacacttgtgctgacatcacactcttacccacacatgc
tgtactgtttttttttttctttctttctaaaagcaaaagacaatcagaaacagagaaaga
aaaggcaggagagaggcagggtcgaaagggagcgaagggggaaatatccatttataactg
tagctaactctgtgaaagattgcttattaatgtgaattattgtaaatggtttgcctagat
gttactgaacaaagatatggaaggagggggcataggaggcagaaagaaaactaactgtag
aattgcctgcttcttgggagggggataaatcaggtgtaataacgatacaaggagagaggt
ctgtttgcctttcaaaacttagaatctagagctaaaaatggtggcgtccagagaaggtat
agaattagtgaagtatattgtaaagtaaaagaataaaataaaacagtgtaactattgtcc
tccttgtattgctgcctacaaataaagcggtggcaacactatatttgcaatcctgatgga
aggtctgccttgcagaacctttgaaacctttggctatacaaaactgctgtcttctagaga
gtagatttgacatgcaattgctatcattggtaatggctttgtctcaaagctctctgatct
cactaaacagtgcagttgtagcaattatatcatgattcaccttagacttgcagatctcag
tcctggtccatcttttctgtggcacacacctacgatctgtagatggttttctatgtcaca
ccatacacacgtagaaaacccagggtttattctggtgttattttcaaatcataaataatg
ttcactttattgtcattcatgttgacaaaaattctctttacaatattaatgagatgtgtg
aatgtgtatatacatgtaagaaatatttttaagccaagctgattgtaactgggagggaaa
tgcttgtgaagaaaacaaaaaaagaaaaagaagaaatgatcaaggaaatttgggtgatgt
ttaacagctgtttcatggatatatatctattatattttcaggccacaattaaatgtgatt
ttaataatcatttggtatttaaataatatactatgattgtcaaatggaattttaattaaa
tgcacattttcttctaaaatatgaagtgttacccctgcaaaaagaccttttctttcctaa
gcacactttttaaaataatgctcactggtttagtaaagaaaggctgtctttacagtcttc
tttaccctttcacattcatccagcatttgatgagtcttgagggaattaaaggcaagaatt
taaactaagtaaatgttcttataatctctaatgaggataatgaaaacagcgctcagaggg
atgtctaagataaaacacccttcaagtaagtagagagagcagtctctcccctaccatctc
tttgggggcgtttcctgttctccatgtttgggaggcagtcacattccatctcctttacct
ttgttcttggtctctgtaggaaactttatatcatattacccactccccacccccagcatt
caaaagctgaatgagcttttaggccttagttaaaaccaagcttcaggaaggaactgctca
acttagtcttcttgctttgttctgtgtttcagagatcatcaaattggtttaaaggccttc
tactttccactggtttaaagaattatttttattaaaatatgactgatgtgacctgcccat
ctttatctttacctctgctctcaagacatacacattatgtggatgctaactataacagac
aaaggtagtactccacataccaaaaccacaataaattcaattgtgttttaaattgaagaa
aagcaaacaaacaaacaaaaaaactaaaataaacttatagatatgctccttatacagcaa
caacaattctagcatttgtttgtttgtttgtttgtttttctttttgtctttgcttcaatt
tcagttcttattagaaacacattaaagacatttcagacaggttcaaggtgaaggacagtt
tgtcacagaactatgagaccaatttgttatttttaaaggcaggattaatttgaatgttat
ctcttaccagttgttggtatttaagatgaatgtattgagaataattggaaatgtttgcat
aataaatagaaaccattgagcctatagttaggaaaattccaacagctttctttccaatat
aaaagctataggaaggctttccagtataaaagcaatataagaaagttatacctccttaca
gggggaaaaacattttcttttttttttctttttttttttattaggtattttcctcgttta
cattttcaatgctatcccaaaagtcccccatacccacccacccccaatcccctacccacc
cactcccactttttggccctggcgtgcccctgtactggggcataTAAAGTTTGCGTGTCC
AAAGG
Primer
(+)atgctcacacccaaagctaga
(+)cctttggacacgcaaacttta


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