Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm1680 ]


Position: chr1:88,398,933-88,401,929 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: 1700019O17Rik - Ptma

Timepoints:
e12.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GCGTCTAGACCTGTCATCCGggcaccctggaaagagccccttccctctgccccaccactt
aacctagagggcatggaaatggtgtgaggagcccaaaccccggcttccttctgttagggt
tgaggggctcagggattattcatgggacttggcttagttcttactggcaccctctccctc
tgagataggtcaggcgctgaggcccaccctggctggctggctggctgctgggctctggct
cctcgcatgcgtctgggctctggtaacctatgcatacttgagcacattgcaggctttccc
tttaacaaagatccctcctcaggatcccacttaatcttcacagcagcctggaacacaacc
ccacatctcactcacagctgaggaaccacagccttaaggggcttgtgtgtggctagacag
gcatacacatcttatgcatggagtagccctggggtttaaaaagagcctatttgctcttac
cctcttgctccctccctccccattcccttcccccctcagcacgtggtcacggcaagcctc
tactattctactctctcctctgcctctactagccttttaactcccctccgatgacctgaa
taaactctattctataccaaaaaaaaaaaaaaaaaaggcgtattttttacaaatatttac
acacacacacccactatagagaccatgtttagaggacaatttctgagttctctaacttca
ttatatgagtgagtcctggggatctaactcaccaatttgagtctccctggccttctcttt
cttcaaggagttttggtataaagttcctccccgaccgacctccacccctgcaccatcagg
cccttggtggccagctgtggagaaactgcctgcctctagtggattatgatccctgtacaa
gaggactctagaggactggtcaccaagcctgcaaggtaccctgacctgagtccagtttta
ggttcctaccgggaagggggggatggtgtacggggagaagaggggaaccagcaagaccgg
gccctggggctcttgaaggatgggggtggaatgggacgtgcctgggcagacgaagtgggg
acaaagagggccccagcacacctggcggcctgcagcccgcgcccgccaacccagattcaa
agtggagtagaggctgtgattggtggccgggcccagagccccacccctctcacctcttaa
gcatctgggaaaggggaaccttgttgagaaaggcccctcctcatgttcttaaccactctg
cggtggcctggctagtaaaggaacctggttcgctctccctcgtgcctcaagcctggctgg
ggttctgggggtagagctccatcactactctcggacttacagggccatccagtcagactt
ccctgacttgactttcagactatggcctcctccacttccttgtcttaccctggcccccac
tctttgagtgatccctgttctctggcccttctcccagtacagccaccaccctcgggacag
cttcccgggatccggtctcttcacgcgtgcaccctgtcactacagtggccgtcgagcttc
tccaggaggcggtgtctggaactcgctacacggtcctgacacccccttcctgcagcaggg
aggagggcgggtagtttggtacatagctctccgggtaccgcagggatgcaagcccaacgc
ctgtgtaggcgccctcgcgggtgcagatggccgcctacggagcaggtccgcacagggggg
cccgggggcgggggagttgctaggagctcagatttcggcttcgaggggcggggctggtgc
cgaggccgcaaccaatcccgtctcggcccggactccccaccagccgccaatcaccgttcg
gccaaccttctgcccgccgtgtcctttgttcccgctggcccggtggcagccgcgggtctc
cggccgtaggacttccgcccgcgcggaccaggccatgtgccgcgtagctgggcccgctag
ggggcctcctggtctcgccgtcaggtggcctgttcgtgtccttgcacacagtctcatctg
ccctgagtggttccggagggtccggacaaagcgttttggaaggcgggctttagtttgggg
cggggaggtagggtggcggcggcacggaggagcacgggacctgggcagaggtccagctct
ggctccacctttccttcctcgccctcagctgcgctgcctatgctggcggggttttcccat
gcacagctctcatatccatccgcctgcgaactcctggccgtctttggtgtgcatcctgtg
acgttcctggaagtcgcaggtgcctctcgcaggtcctcttttgtcagagagtctaggata
tccttaactgtgacccactcggttaccttgacctggggatcacagatcaaggcagggcca
acccaccgtggagtctcaggctttccaaacttcaacagcatctctaacacggcactggcg
gccttggttcctcctgagacttggttcctctctctctgactaaattggagccaccgtttt
cttatctgcaaaatggggtcgattacagtgttgtcacctttattgctttttttggttttg
aagacagggtttctgtgtatagccctggctgtcctggaactcgctctgtagaccaggctg
gccacgaaccccacctgcctctgcctctgggtgctgggattaaaggtgtgcactgtttgc
ctccacacatcttttgaccaggcggactcctgtcctctgctgaacagctcgtgttcctcc
ggctccaaaacctgggcgttgacaacgggctctctgccatatagctctgcctgcctttcc
tgtagacgggtagaattacttttgttgaagcctttactaggggtctaagggagcagcagg
tcatctccacgtgtccccttacaaagatgtggggcattgagcacagtcaggacaacagac
ccggcggcagtttggctctgcaaacatgctctgcaaaCAGGCATAAGGGCGAGTGAT
Primer
(+)gcgtctagacctgtcatccg
(+)atcactcgcccttatgcctg


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.